Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1491 ATGGCTTTTCACTCCTCCTTCGCCGGTCCTTCTGGAGTTCGAGTGGCCGTAATCGGCGACCGAGGTACCGGCAAATCCAGCTTGATAGCTGCCGCGGCTTCTGAGGTCTTCCCTGACACCGTCCCCCCTGTCCTTCCTCCGACTCTGTTGCCTGATGACTGGTTCCCCGATCGTCTTCCGCTTACCATCATTGACACACCTTCCAGCTTGGAAAAACGGGGCAAGCGCAATGAAGAATTGAAGCGGTCTGATGTAGTAGTTTTGACATATGCTTGTGATGAACCGACGACCATTACTCGGCTTAGTACTTACTGGCTACCTGAACTGGAGGAGTTGGAGGTAAAGGCACCTGTAGTTGTGGTTGGCTGCAAGCTAGATCTTCAGGACGAGAATCAGCAAATAAACTTAGAGAATCTCATGACGCAGCTCCTACAACAGTACGGTGACATTGTGACCTGTATGGAATGCTCTGCAGCTACACTATATCAGGTCCCTGAAGTATTTTATTTTGCTCAAAAAGCAGTACTGCATCCAGTGGATCCATTGTTTGATCATCAGAGGCAAGCTTTAACAGATAGATGTTTAAGGGCACTGAGAAGAATTTTTGTTCTCTGTGATAAAGATATGGATGATGCCATCAATGATGCAGAGCTAAATGGATTTCAGGTTAGATGTTTTGACACGCCATTGCAGCCATCTGAAATAAGGGAAGTCAGAACGCTTATTCAGCAACAAGCACCTGAGGGAATCAACCGACATGGTCTTACTTTTCCAGGCTTTATTTATATCCATAATATGTTCCTGAAGAAAGGGCGTCCTGAAACAGTATGGGCTGTTCTAAGAAAATTTGGATATAGCAATGATTTAAAACTTCGAGATGATTTCCTTCCCGTTCCATCTAACTACACATCTGATCAGAGAGTGGAGCTGACAAGTGAAGCTGTAGAATTTCTGAATGGTATCTTCCGATTGTTAGATATGGATAGAGACCGGGCCCTACAACCTGCAGAACTTGATAAGCTATTTTCTACTGCCCCAGAAAGTCCATGGAGTGATGATCCATATAAGGATGCTGTTGAGAGAACTAATGCAGGCTACATGACTCTTGGTGGATTTCTGTCTCAGTGGGCTCTCATGACGTTACTTGATCCACCATCTAGCCTGGCCAATTTGATTTACATTGGATATAGTGGCAATCCTGCTGCAGCACTCCGTGTTACTCGTAGGAGATCAGTAGATCATAAGAAACAAAAAACAGGAAGAAATGTGTTCCAGTGCTATGTCTTTGGTCCTAAAAATGCTGGGAAATCTACTTTATTATATTCATTTTTGAGAAGGCCTTTCTCTGATAAATATACTTCGACAGTGGTTGAGCAATATGCTGCAAATATTGTTGAATTAATTGGGGGGACTAGAAAAACTCTTATTTTGCGGGAGATACCTGAGGATGAAGTAAAGAAATTTTTGTCAAATCAGGATTGTTTAGCATCATGTGATGTTGCTGTTTTTGTCTATGACGGTTCAGATGAACATTCGTGGAAAAGAACCAGAGAATTGCTTGAGGAAGTTTCTAGACAAGGGGAATTAACAGGTCATAGAGTTCCTTGCCTTCTCATTGCTACTAAGGATGACTTAACTCCCTACCCAAGGGCAGTGCAAGATTCAGTTAGGGTCACTGAAGAATTTGGGATAGAGGCGCCCATTCATGTAAGTATGAAATTAGGTGATTCAAGTAATGTGTATGATAAGATTGTTAGTGCTGCAGAACACCCTCATTTGAATATTCCTGAAACTGATATTGGGAGGAAGAGAAGGCTGTACCATCAGCTTCTTCATCACACTCTTGTATTTGCCTCAGTTGGGGCTGCCATGGCAGTTGTCGGTTTAGCAGCTTTTCGTGGATATGCGATAAAGAAAAGTTCTGCTTAG 1929 0.4318 MAFHSSFAGPSGVRVAVIGDRGTGKSSLIAAAASEVFPDTVPPVLPPTLLPDDWFPDRLPLTIIDTPSSLEKRGKRNEELKRSDVVVLTYACDEPTTITRLSTYWLPELEELEVKAPVVVVGCKLDLQDENQQINLENLMTQLLQQYGDIVTCMECSAATLYQVPEVFYFAQKAVLHPVDPLFDHQRQALTDRCLRALRRIFVLCDKDMDDAINDAELNGFQVRCFDTPLQPSEIREVRTLIQQQAPEGINRHGLTFPGFIYIHNMFLKKGRPETVWAVLRKFGYSNDLKLRDDFLPVPSNYTSDQRVELTSEAVEFLNGIFRLLDMDRDRALQPAELDKLFSTAPESPWSDDPYKDAVERTNAGYMTLGGFLSQWALMTLLDPPSSLANLIYIGYSGNPAAALRVTRRRSVDHKKQKTGRNVFQCYVFGPKNAGKSTLLYSFLRRPFSDKYTSTVVEQYAANIVELIGGTRKTLILREIPEDEVKKFLSNQDCLASCDVAVFVYDGSDEHSWKRTRELLEEVSRQGELTGHRVPCLLIATKDDLTPYPRAVQDSVRVTEEFGIEAPIHVSMKLGDSSNVYDKIVSAAEHPHLNIPETDIGRKRRLYHQLLHHTLVFASVGAAMAVVGLAAFRGYAIKKSSA 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1491 642 FunFam Mitochondrial Rho GTPase 10 180 - -
Lele05g1491 642 FunFam Mitochondrial Rho GTPase 185 289 - -
Lele05g1491 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 594 IPR027417 -
Lele05g1491 642 ProSitePatterns EF-hand calcium-binding domain. 326 338 IPR018247 -
Lele05g1491 642 Gene3D - 487 588 IPR027417 -
Lele05g1491 642 SMART rab_sub_5 13 178 - -
Lele05g1491 642 ProSiteProfiles EF-hand calcium-binding domain profile. 313 348 IPR002048 GO:0005509
Lele05g1491 642 ProSiteProfiles small GTPase Rab1 family profile. 416 638 - -
Lele05g1491 642 PIRSF Miro 9 642 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Lele05g1491 642 Pfam EF hand associated 350 418 IPR013566 -
Lele05g1491 642 Gene3D - 185 289 - -
Lele05g1491 642 SMART rho_sub_3 15 178 IPR001806 GO:0003924|GO:0005525
Lele05g1491 642 ProSiteProfiles Miro domain profile. 10 177 IPR020860 GO:0003924|GO:0005525
Lele05g1491 642 Pfam EF hand associated 228 313 IPR013567 -
Lele05g1491 642 Gene3D - 11 180 IPR027417 -
Lele05g1491 642 ProSiteProfiles Miro domain profile. 421 590 IPR020860 GO:0003924|GO:0005525
Lele05g1491 642 FunFam Mitochondrial Rho GTPase 291 481 - -
Lele05g1491 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 210 IPR027417 -
Lele05g1491 642 PANTHER RHO FAMILY GTPASE 425 584 IPR003578 GO:0005525|GO:0007264
Lele05g1491 642 CDD Miro2 421 599 - -
Lele05g1491 642 FunFam Mitochondrial Rho GTPase 488 589 - -
Lele05g1491 642 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Lele05g1491 642 Pfam Ras family 428 549 IPR001806 GO:0003924|GO:0005525
Lele05g1491 642 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Lele05g1491 642 Gene3D - 291 481 - -
Lele05g1491 642 PRINTS Transforming protein P21 ras signature 114 127 - -
Lele05g1491 642 PRINTS Transforming protein P21 ras signature 153 175 - -
Lele05g1491 642 PRINTS Transforming protein P21 ras signature 13 34 - -
Lele05g1491 642 SUPERFAMILY EF-hand 183 379 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1491 Lele-ChrLele05 9547122 9554154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1491 1 641 EF-hand Containing Proteins AT3G63150 58.502 0.0 813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1491 05 9547122 9554154 Lele07g1551 07 9559298 9566589 hybridization