Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1479 ATGACAACGATCCGCAGGTTTTGCTGTAACGATCTCCTCCGCTTTGCTTCCGTCAATCTCGACCACCTCACTGAAACTTTTAACATGTCCTTCTACATGACCTACCTTGCAAGATGGCCGGACTATTTCCATGTCGCCGAAGGTCCTGGCAACCAAATCATGGGTTACATTATGGGGAAAGTGGAGGGGCAAGGAGAGTCCTGGCATGGTCATGTTACTGCAGTAACTGTTGCCCCAGAATATCGTCGGCAGCAGTTAGCCAAGAAACTGATGAATATACTGGAAGACATAAGTGACAAGATTGACAAGGCTTACTTTGTGGATCTCTTTGTGAGAGCATCAAATGCACCTGCTATAAAGATGTATGAAAAGCTTGGCTATGTGATATATCGGCGAGTGCTACGCTACTATTCTGGGGAAGAAGATGGATTAGATATGAGGAAGGCATTATCGTGTGATACTGAAAAGAAGTCTATCATCCCTCTTAAACGGCCAATCACTCCTGATGAATTAGATTTTGATGGAAAGGGAAAATTTTCAGGGATTGGTGAGATGTCCTGTGTGCTCTTGGCATAA 576 0.4444 MTTIRRFCCNDLLRFASVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNQIMGYIMGKVEGQGESWHGHVTAVTVAPEYRRQQLAKKLMNILEDISDKIDKAYFVDLFVRASNAPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKALSCDTEKKSIIPLKRPITPDELDFDGKGKFSGIGEMSCVLLA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1479 191 Pfam Acetyltransferase (GNAT) family 39 127 IPR000182 GO:0016747
Lele05g1479 191 PANTHER N-ALPHA-ACETYLTRANSFERASE 20 1 171 - -
Lele05g1479 191 FunFam N-alpha-acetyltransferase 20 2 161 - -
Lele05g1479 191 CDD NAT_SF 43 97 - -
Lele05g1479 191 Gene3D - 2 163 - -
Lele05g1479 191 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 2 151 IPR000182 GO:0016747
Lele05g1479 191 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1 150 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1479 Lele-ChrLele05 9469046 9472012 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lele05g1479 Acetyltransf_1 3.8e-14 CL0257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1479 05 9469046 9472012 Lele05g1479 05 9469046 9472012 ECH
Lele05g1479 05 9469046 9472012 Lele07g1539 07 9459570 9461892 hybridization
Lele05g1479 05 9469046 9472012 Lele08g1330 08 8480352 8486014 hybridization