Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1473 ATGGACAAGGTTTTCTTGGGGAAAAAACTGTTCTTGGAGGAATGGCATGACCTAGAGATGGAGGTTCCTGTTTTGAAGGGTGAGGGTTTGGCGCATGAAACAGAGGCATTAAACTCGACAATTCAGGACAAACTGGCGGAGCCTGTTGTACAACAAGAAAAGGTCTTTGATTGGGATTCGAATAGCAATGAAAATATCATGTTATCCGAAAATGGTAGCAAGCGTAGTCTAAGCTGTGATGAAAACGTTGAAGGAGTTGGCATTGGGGTGGAGGTGAAGAAACAAGATGATTTGAACGATCAGGTGCAGGTTGGGGGTCGACTATTGTCCACAGTGTCTGAGGGAGCTGACAAAAATATATCTGAAGATCGAGAGGCATTAAACTTGAAAGTTGAGAATAAGGATGCAGAGGCAATTGTGCAACAAGAACGTGACTTAGATTGGGATATGAGTAAGGGTGGAAATGTGGGGTTTGTTTATGACAGGAGCAAAATGCGTAGTTTAACCTGTGATGATAACATTGGAGGGGTTGAAATTGAGGTGGAGGTGATGGAGAAAGATTATTTAAATGATAAATTGCAGATTGGTGGTGAAGTATTGCGCTCAGCGTCAAAGAGACCAGTCAGTAATGTATCTGATGGAGAGACAACTGAGAATGAGGAAGTGAAGCCAATCAGCCAACAACCATTTGACTTAGATTGGAATGTGAGCAAGAGGGGAAATGTTGGATTGGCTAAGACTAGGATAAAAAGGAATACTTTACAGTCTGATCATTGCTTTGAAGGACTTGATATTGAGATGAAGTTGAAGAATAAAAGTAATGCAAATGATAAAGTGAAGACTAGTGGTCGAGTATTGCGCTCAATGTCAAAGAGAGTAGACAGTAAGATATTTCATGGTGGAGAAGCTGATGAGGTGTTGGTTAGGAAAAATAGAGAGAGTGAACATGTTTGGTTTGAGGAAAATAAGGTTAAGGTGAAAAAGGAAGAAGGGGACGTTTTTGTTAGTAGCGGTTATGAGAAGGAGGGAGTTGATGTGAAAATGGATGGCAATGAAGGAAGGGAGATGAAACGGAAGCGTGGCAGGCCCCCTAAATTGAAGATGGAGGAGCAAGATCAGGCAGTTGGTAATAGGCAACAGAAATGTGGCAGTCCTCCCAAATTGAAGATGGAAGAGCAAGATCAAGTTGTTGGTAAAATGCAAAGGAAGCGTGGGAGGCCCCCAAAAGTGAAGATGGAAGAGCAAGATCAACTAGTTGGTGATATACAACAGAAGCGTGGAAGGCCCTTCAAAGTGAAGATGGAAGTGCGAGATCAACTAGTTGGTAATATGCAACGGAAGCGTGGAAGGCCCTTCAAAGTGAAGATGGAAGTGCGAGATCAACTAGTTGGTAATATGCAACGTAAGCGTGGGAGGCCCTTCAAAGTGAAGATGGAAGAGCAAGATCAACTAGTTGGTAATATGCAACGTAAGCGTGGAAGGCCCCCCAAAATGAAGATGGAAGAGCAAGATCAACTTCCTGACAAAAAAATGCCATGGAAGCGTGGAAAGCCTCCCAAAAGTGGGCAGAAAATTAATCATCTGGAAATAGCACGAAACAGAAAAGAAAAGGTGGGCTTTCAAAAAGGTAATAAAAGTAGAACTGTGAGAGACAATACAAATACAAATGCAGTGGATGATATGTGCTCGAAAAAGGGATCTTGTGTAACAGAATCAAAAAAGAACAGATTTTCTCCTGTCAAGAAGAATGAATTTGGGAGCCTTCCAGAAACCAAGAATAATGCATTGACTTCGCCATCAACATCAAATTCTGCAAATCCTCTCATTAAGAAGAAAAAAGGAATGAGAAAAGCAAAGCAGTTGGCGAGGCAACATATTTGGGAGCTGCTTTCGGCTGCAGGCTGGATAGTTGATTACAGACCTAGGAATCGCAAAGAGTATAATGATGCAGTGTATGTTAGTCCAGATGGAAAGACTCACTGGTCAATTACCTTGGCCTACAAAAGGCTTCAGAAGCATTCTGAAGCTGGTGATGGTGAAGGTGAGGTATACATTCCAGGTTTCAAATTTGTGCCCATACCAGTGGAGGAATTCAATATTCTAACTAAGGTCATTAAAAACAGAAGAAAAGGTAAATATAAATTGAAGCAAACAGGAGGAAAAGATGGAGATTCAATTAATGGAATCAAAAGAAAGGTGAAGAAAGAACAATTAGGTTCTTTTGGAGGCTTAAATATGTCATTGAAGGGGAAAGTGAAGAGAAAAATGTCACTTGTTGAGGAGGACAATTTAGACAATACACTACATCAAAGGTTTTCAGTTCTGGTCAAGGATCGTAAACGGCAGAAAACACACACTAAGAAGCGAAGTGTTTTTATGGTTCGCAATGCTGAGGAGATAGACTCGGAAACTAATGGGTATTTACTTTACACTGGAAAGCGAACTGTGCTTGCCTGGATGATTGATTTGGGAACAGTTATGCAAAATGAGAGGGTTCAATATGTAAATTATGGAAGGAAAGGCGCAAAACTGGAGGGTAGGATCACAAGAGATGGAATTCATTGTGACTGCTGCAATGAAATTGTAACAATGTCAGAATTTGAAGCCCATGCAGGAAGCAGACTCTCTGATCCACTAAAAAATATACATATAGAGAGAGGAATTTCCCTTCTGCAATGCCTGCTAGACTCATGGAATAAACAAGATGAACATGAAAGAAAAGGCTTCCATTTTATTGACACTACAAGCGAAGACCCCAATGATGAAGCATGCGGTGTCTGTGGTGATGGCGGAGACTTGATCTGTTGTGATAATTGCCCATCAACATTCCATCAAAGCTGCCTAAATATCAAAGAGTTCCCACCTGGCAACTGGCGATGCATTTATTGTTGTTGCAAATTTTGTGAGTTGGTTGACGGAAGTACAAATGAAAGAGATGGCTATGATGACTTTACTACATCTGCTTTACTTACTTGCCGATTATGCAATCAAAAATATCATAGATCTTGTGTTGAGGTAAATGGTGTCCAAGCTGATGACTCTAGCTTTGCATTTTATTGTGGAAACAGATGTGAGGAGTTATCCAAGAGACTTGAAATGCTTCTCGGGGTTAAACATGACATTGAAGATGGACTTTCTTGGACTTTCATTCGCCGGTTAGATGTTGGCTATGATGCTTCTCAGATAGAATCTCAGATGGTTGAATGCAATTCCAAGCTAGCTGTGGCATTATCTGTAATGGATGAGTGCTTCATGCCATATATTGATCATAGAAGTGGGATTAATCTCATCCACAGTATTCTTTATAACTGTGGTTCAAACTTCAATCGCCTGAACTATACTGGTTTTATTACTGCTATCCTGGAGAGAGGTGATGAGGTCATCGGGGCAGCATCTATTAGGATTCGAGGGAACCAACTAGCAGAAATGCCATTCATTGGGATCCGCTATTTGTATAGGCACCAAGGAATGTGCCGCCGGCTTCTGAGTGCCATTGAATTGGCACTTGGCTCTTTAAATGTTGAGTTATTGGTCATACCAGCGGTCTCAGAAGTCAGAGATACTTGGACTTCTGTTTTTGGGTTTGAGCCGCTTGAAGTGACCAGGAAGCAGATGATAAAGAATTTCAGTCTGCTAGTATTCCCTCATGCAGATATGTTAATGAAAGAGATAAAGAAGCCTAAAGTTGCTGATGAAGATCCAGTTCCTATGGAAGTTTCGAATCTTAAGCTTCAGAAGAATCAAAGTACACTTGAGGAAGCAACTGCCTGTGATGAACCAAGTTCATTTAGGTCTGATTTGATCATTTCTGATGGGAGTGAGATACCTGCGTTGGATACATGCCCAGTGAATGATAGACACGTATCTGATGAATCTGGTTCCCCTGATGGCTTATTGAATAACACACATCACATTACTAGTGAGACTGTAGATCCTGATACAAGTCCAAAAGATGTAAAATATGAAGTTCAATTCCGTGCTGTCAGCGATAATTTGACAGTGGAAGCCATGACTGATGTAGAGGCACATGGTTATGTTAGCACTGCTCATTTACTAGCTGAAGAGATAATCAATCATGATCGTGTTCAATCGGAAGAAATAGATTCTGAATCTATCAATGGCTGCTGTTCTCAGCGGAAACCGACTGGTGATTGTGCCCAAGATGAAGTGAATCTCGAGACCACTGAAGCTGATAAATCAGACATGCGTGTTGCAGAAGCAACCAATCTCCATGGTCTCGTACATCCGGGAGATTCCCATTCCCAATCAGTACGGATTACTTCAGGTTCCTGCGAGGATATCACAGACGTTATAAATGAGAGAAATGAAGCAGCCATTACAGCTGATGGGAACTCAGATGTTGGCGTTAAGCCTGGTATAAATTGGTCTTCAGAGCCACCCGAGCCTGATTTACAGGTCAATCAAACTGGACAGGGCGACGCACCAACCTTGTGTGGTTCCGGCATGGCTTTTCACTGTGCATCAGGCGGTGTTACTTCATGTGGTAATACCGAAGTTATAGTTCTATCCAACGAAGCCAGTTGA 4545 0.4163 MDKVFLGKKLFLEEWHDLEMEVPVLKGEGLAHETEALNSTIQDKLAEPVVQQEKVFDWDSNSNENIMLSENGSKRSLSCDENVEGVGIGVEVKKQDDLNDQVQVGGRLLSTVSEGADKNISEDREALNLKVENKDAEAIVQQERDLDWDMSKGGNVGFVYDRSKMRSLTCDDNIGGVEIEVEVMEKDYLNDKLQIGGEVLRSASKRPVSNVSDGETTENEEVKPISQQPFDLDWNVSKRGNVGLAKTRIKRNTLQSDHCFEGLDIEMKLKNKSNANDKVKTSGRVLRSMSKRVDSKIFHGGEADEVLVRKNRESEHVWFEENKVKVKKEEGDVFVSSGYEKEGVDVKMDGNEGREMKRKRGRPPKLKMEEQDQAVGNRQQKCGSPPKLKMEEQDQVVGKMQRKRGRPPKVKMEEQDQLVGDIQQKRGRPFKVKMEVRDQLVGNMQRKRGRPFKVKMEVRDQLVGNMQRKRGRPFKVKMEEQDQLVGNMQRKRGRPPKMKMEEQDQLPDKKMPWKRGKPPKSGQKINHLEIARNRKEKVGFQKGNKSRTVRDNTNTNAVDDMCSKKGSCVTESKKNRFSPVKKNEFGSLPETKNNALTSPSTSNSANPLIKKKKGMRKAKQLARQHIWELLSAAGWIVDYRPRNRKEYNDAVYVSPDGKTHWSITLAYKRLQKHSEAGDGEGEVYIPGFKFVPIPVEEFNILTKVIKNRRKGKYKLKQTGGKDGDSINGIKRKVKKEQLGSFGGLNMSLKGKVKRKMSLVEEDNLDNTLHQRFSVLVKDRKRQKTHTKKRSVFMVRNAEEIDSETNGYLLYTGKRTVLAWMIDLGTVMQNERVQYVNYGRKGAKLEGRITRDGIHCDCCNEIVTMSEFEAHAGSRLSDPLKNIHIERGISLLQCLLDSWNKQDEHERKGFHFIDTTSEDPNDEACGVCGDGGDLICCDNCPSTFHQSCLNIKEFPPGNWRCIYCCCKFCELVDGSTNERDGYDDFTTSALLTCRLCNQKYHRSCVEVNGVQADDSSFAFYCGNRCEELSKRLEMLLGVKHDIEDGLSWTFIRRLDVGYDASQIESQMVECNSKLAVALSVMDECFMPYIDHRSGINLIHSILYNCGSNFNRLNYTGFITAILERGDEVIGAASIRIRGNQLAEMPFIGIRYLYRHQGMCRRLLSAIELALGSLNVELLVIPAVSEVRDTWTSVFGFEPLEVTRKQMIKNFSLLVFPHADMLMKEIKKPKVADEDPVPMEVSNLKLQKNQSTLEEATACDEPSSFRSDLIISDGSEIPALDTCPVNDRHVSDESGSPDGLLNNTHHITSETVDPDTSPKDVKYEVQFRAVSDNLTVEAMTDVEAHGYVSTAHLLAEEIINHDRVQSEEIDSESINGCCSQRKPTGDCAQDEVNLETTEADKSDMRVAEATNLHGLVHPGDSHSQSVRITSGSCEDITDVINERNEAAITADGNSDVGVKPGINWSSEPPEPDLQVNQTGQGDAPTLCGSGMAFHCASGGVTSCGNTEVIVLSNEAS 1514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1473 1514 MobiDBLite consensus disorder prediction 463 487 - -
Lele05g1473 1514 MobiDBLite consensus disorder prediction 580 607 - -
Lele05g1473 1514 PRINTS AT-hook-like domain signature 487 497 IPR017956 GO:0003677
Lele05g1473 1514 PRINTS AT-hook-like domain signature 357 367 IPR017956 GO:0003677
Lele05g1473 1514 PRINTS AT-hook-like domain signature 399 410 IPR017956 GO:0003677
Lele05g1473 1514 MobiDBLite consensus disorder prediction 352 431 - -
Lele05g1473 1514 SMART AT_hook_2 357 369 IPR017956 GO:0003677
Lele05g1473 1514 SMART AT_hook_2 445 457 IPR017956 GO:0003677
Lele05g1473 1514 SMART AT_hook_2 467 479 IPR017956 GO:0003677
Lele05g1473 1514 SMART AT_hook_2 423 435 IPR017956 GO:0003677
Lele05g1473 1514 SMART AT_hook_2 489 501 IPR017956 GO:0003677
Lele05g1473 1514 SMART AT_hook_2 401 413 IPR017956 GO:0003677
Lele05g1473 1514 MobiDBLite consensus disorder prediction 352 374 - -
Lele05g1473 1514 SUPERFAMILY FYVE/PHD zinc finger 915 969 IPR011011 -
Lele05g1473 1514 MobiDBLite consensus disorder prediction 494 515 - -
Lele05g1473 1514 Pfam Tify domain binding domain 846 895 IPR032308 -
Lele05g1473 1514 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1064 1210 IPR000182 GO:0016747
Lele05g1473 1514 MobiDBLite consensus disorder prediction 587 607 - -
Lele05g1473 1514 SMART PHD_3 965 1025 IPR001965 -
Lele05g1473 1514 SMART PHD_3 923 964 IPR001965 -
Lele05g1473 1514 CDD NAT_SF 1120 1179 - -
Lele05g1473 1514 MobiDBLite consensus disorder prediction 1449 1479 - -
Lele05g1473 1514 MobiDBLite consensus disorder prediction 1294 1309 - -
Lele05g1473 1514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 912 984 IPR013083 -
Lele05g1473 1514 MobiDBLite consensus disorder prediction 463 523 - -
Lele05g1473 1514 MobiDBLite consensus disorder prediction 1286 1316 - -
Lele05g1473 1514 MobiDBLite consensus disorder prediction 385 431 - -
Lele05g1473 1514 CDD PHD1_AIRE 924 963 - -
Lele05g1473 1514 ProSiteProfiles Zinc finger PHD-type profile. 921 966 IPR019787 -
Lele05g1473 1514 PANTHER PHD FINGER PROTEIN 12 607 1329 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1473 Lele-ChrLele05 9435277 9444263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1473 399 1231 PHD Transcription Factor Family AT5G36670 37.652 0.0 572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1473 05 9435277 9444263 Lele13g1987 13 27277858 27284777 CCT
Lele05g1473 05 9435277 9444263 Lele14g1921 14 25614602 25617272 CCT
Lele05g1473 05 9435277 9444263 Lele15g0417 15 2403980 2409803 CCT
Lele05g1473 05 9435277 9444263 Lele16g0441 16 2378314 2384282 CCT
Lele13g1999 13 27345881 27347497 Lele05g1473 05 9435277 9444263 CCT
Lele14g1931 14 25672658 25673497 Lele05g1473 05 9435277 9444263 CCT
Lele15g0407 15 2337441 2338622 Lele05g1473 05 9435277 9444263 CCT
Lele16g0432 16 2323134 2323862 Lele05g1473 05 9435277 9444263 CCT
Lele05g1473 05 9435277 9444263 Lele05g1473 05 9435277 9444263 ECH
Lele05g1473 05 9435277 9444263 Lele07g1533 07 9428130 9436394 hybridization
Lele05g1473 05 9435277 9444263 Lele08g1324 08 8438538 8448607 hybridization