Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1455 ATGCTCTCAGCTCTGGAGCACCATATATGCCGCCTTTTTGATAGCCCAGCTAGTGTATCGAGGGACATAATTTATATACGTTTCCAGTTTCTTCTTCACCTGCAAAATATCAATAATGATTTCATGAAAAAAGTTCTCACCTACATGTATCTTGTTTTGGCTTCGGGTTGTTGTATTGTTGCTCTGTTCAGCTTCAATTCGTTCTTAATAATTCTTACTTTCCCAAGTCTCAACGTTCTTGTCAGTTCTTTCATTTCCTTCGAGGAGTTTTGCACCAAAGTAAAGAGGTTGGGGTTATTCCAGTTCGCAATGGAGCAGTATGAAATTCTAGAACAGATTGGCAAAGGTTCCTTTGGTTCTGCTCTGCTTGTGAGGCACAAGCATGAAAGGAAAAAGTATGTCCTCAAGAAGATCCGCCTTGCCCGTCAAACTGATAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTTATCTCTAGAGTACGAAATCCCTTTATAGTTGAATATAAAGATTCCTGGGTAGAAAAGGGTTGTTTCGTGTGCATTGTCATAGGCTATTGTGAAGGTGGAGACATGGCAGAAGCTATTAAGAAGGCTAGTGGTGTTCATTTTCCGGAAGAGAAACTTTGTAAGTGGCTTGTTCAACTCTTGATGGCACTTGATTACTTGCATGCAAAACATATCCTTCATCGTGATGTCAAGTGTTCTAATATATTCTTGACAAAAGATCAAGACATACGACTAGGTGATTTTGGTCTGGCTAAATTACTGACATCTGATGATCTCGCTTCCTCCGTTGTTGGGACTCCGAGTTACATGTGTCCTGAGCTTCTTGCTGATATTCCCTATGGTTCAAAGTCAGATATATGGTCTTTGGGCTGCTGTGTATATGAAATGTCTGCCCACAAGCCAGCTTTTAAAGCTTTTGATATGCAAGCATTAATTAACAAAATAAACAAGTCAATTGTGGCTCCTCTGCCAACCATGTATTCTGGCGCTTTTCGAGGGCTTGTCAAAAGCATGCTACGGAAAAATCCAGAGCTTAGACCAAGTGCTTCAGAGTTGCTAAATCATCCGCATCTTCAGCCCTACATTCTTAAAATTCACCTAAAACTAAACAGCCCCAGAAGAAGTATTTTTCCATTCCAGTGGCCTGAGTCAAACTACGTAAGGAGAACTCGGTTTGTGGAGCCAGACTCTGTTTCTACCCTTTCTGATAGAGATAAACGCTTGTCATTTAGCAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAAAAAGATTCTCAGTGTTCTACTCAAAATGGTTATGGATTTTCTACTCGTTCAAGGGACAAACTCTACGAACTATCTGTTGGTTGCGTCCGTGAAGAATGCATAACTAACAAGTCAAAAGCCACAAAGTTCTCTACTGTTGGCAGTAATACTCCAAGATTGCGAACAGCTAAGGATTCTGTGACCCCCAGAAGGCAGACAACCCCATCAAAAATATTTCATGCTGGTTCAAAGCGTGATTCACTTCCGGTGACTCATACTCCAGCAGGAAATTCTTCTCCACCATCACGTAGGGCATCCCTTCCGCTGCCTACGAGAGTCATGACCACAAAAACCTCTTATAGAGCCAAAGTGTGCTTCCTCCGGACCGTGGAGTCTCCAGATGTTTCTGTTAATGCTCCACGAATTGACAAGATTGCTGAATTCCCTCTTGCATCTTCTGAGGAAGCTATCTTCGCTGTCCCCAGAAGGTCATCAACATCTGCCATGTGCTCTTCTGCTGTTTGCTCAATCACAAAGGACAAGTGCACTGTCCAGGTTGCGGACAAGGCCGTGGCAACCCCTGCCAGCGCGGGTGATACTTGTCCTGAAGCTTCAGGTCCAGGATATGGAAGCGACCGCTCTGAGCATGTTTCGGTTGATGTTTCAAGTCGTTCGTCAGCAGAGTCACAACAGCGTCGGTTTGACACCTCGTCTTACCAGCAACGCGCCGAGGCATTGGAGGGGTTGCTTGAGTTCAGTGCAAGACTCCTACAACAACAGAGGTTCGAAGAACTTGGAGTGTTGCTGAAGCCATTTGGGCCTGAGAAGGTTTCTCCAAGAGAAACAGCTATTTGGTTGACGAAGAGTTTTAAAGAAACCGTGTTTCTACTTTGTGGTGCCGGCTGCCGTCTGCTGGAAGATCAAGCGGAGGGCACAGAGAGATCACAGATGGAAGAAACAGAGATACTAGAACTATACGAGCTTAGCTATTCGGACCTTGTTCTCTTATCTTCAACAAATGCTTCATCGACTTCACCTGAGGAGCTCGACAACATCGAGTCTATGGCGAAAACCGTAATGGAAACCCTAGGGCCAATGGGTTCAGGCCTCCTTGCAGTCACTGGTGTTCCCAGAGCGTCCGAACTGCGTAAGGAGTTTCTACCTCTTGCACGGGAGCTCGCGCTACTGGACCATGAAAGCCGTAAACGCATCCTTAAGGAACACAGCTTGGGTAGCGATGTTCCTTTAAAAAATCCAGATAGGAGCGTGTCCTCCTTTGCTATACAACTGAAATATGCAAATGCCACAATATTAACTGAAAGTAAACCAAGTAGAGGAGCAGTTGACGAATTACATTCTGATGATAATCATAAGGAGGTTGATCAGATGATGTCAGAATGCCACTATATGAAATTTAAGAATATAGGGAGTATTTTCAAGGAGTTGGGATTTGGCATGATGGAGCTGGGGCTTCGCCTTGCTCAAATATGTGATAGGGCCATTGGGAGCAATGAGTTAGAGCAGAGCCTCTTAGAATCATGTGCAGCAAAGGGGCGTCTTATACATTATCACTCGGTTCTAGATGGATTGCTTCTTAAAGAACTTGACAGGCGCAAGAGAATTGGCAAGAGTGAGCCTAGTATCAAAAGGGATCAGGAATACATAAATACAAAGGGCCAGAAACAATTAAAAGGTTCGGAGTTAAATTCAAATGCCTGTGATGCTAATTCATGTGGGATTCATTCTAATTTGTGGCAGCAATGGCATTATGATTATGGTATATTCACTGTTCTGACAGCTCCCCTCTTTCTTATGCCATCTTATTCGCTGACAACCAAAACGGAAGAGCCGTTTTCTGCATCTTGTTATGAAGAATTTCCTTCGCCAATTGGGCATACATCTTTGCAGATATATGATCCAAACAAGAATAAGGTGTTTATGGTAAAGGCTCCACCAGAGAGTTTTATAATTCAAGTTGGGGAATCTGCTGATATCATTTCAAAAGGAAAGCTTCGCTCAACCTTGCATTCCGTATATAGACCTGCAAACTTCGAAAGTTTAAGCAGAGAAACTTTTGTTGTATTTCTGCAGCCTTCGTGGAATAAAACATTCTCGAGCAGAGAGTATCCTCAGACTAAGACGACATCTAATGCTAGGTGTTTAATGGCATCTGATGTTGAACCACAGTTTGGGCAGGATAAAAGTAAACTACGTGACGAAATTCAGAGAATAGTTCCACCACTTTCTTCAAGGTTGAAGCATGGGATGACTTTTGCTGAGTTCTCACGAGAAACAACAAAACAGTATTATGGGGGTAGCGGTTTGCAATCTAACAGATAG 3600 0.4342 MLSALEHHICRLFDSPASVSRDIIYIRFQFLLHLQNINNDFMKKVLTYMYLVLASGCCIVALFSFNSFLIILTFPSLNVLVSSFISFEEFCTKVKRLGLFQFAMEQYEILEQIGKGSFGSALLVRHKHERKKYVLKKIRLARQTDRTRRSAHQEMELISRVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKASGVHFPEEKLCKWLVQLLMALDYLHAKHILHRDVKCSNIFLTKDQDIRLGDFGLAKLLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMSAHKPAFKAFDMQALINKINKSIVAPLPTMYSGAFRGLVKSMLRKNPELRPSASELLNHPHLQPYILKIHLKLNSPRRSIFPFQWPESNYVRRTRFVEPDSVSTLSDRDKRLSFSNDRALNPSISGTEKDSQCSTQNGYGFSTRSRDKLYELSVGCVREECITNKSKATKFSTVGSNTPRLRTAKDSVTPRRQTTPSKIFHAGSKRDSLPVTHTPAGNSSPPSRRASLPLPTRVMTTKTSYRAKVCFLRTVESPDVSVNAPRIDKIAEFPLASSEEAIFAVPRRSSTSAMCSSAVCSITKDKCTVQVADKAVATPASAGDTCPEASGPGYGSDRSEHVSVDVSSRSSAESQQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLTKSFKETVFLLCGAGCRLLEDQAEGTERSQMEETEILELYELSYSDLVLLSSTNASSTSPEELDNIESMAKTVMETLGPMGSGLLAVTGVPRASELRKEFLPLARELALLDHESRKRILKEHSLGSDVPLKNPDRSVSSFAIQLKYANATILTESKPSRGAVDELHSDDNHKEVDQMMSECHYMKFKNIGSIFKELGFGMMELGLRLAQICDRAIGSNELEQSLLESCAAKGRLIHYHSVLDGLLLKELDRRKRIGKSEPSIKRDQEYINTKGQKQLKGSELNSNACDANSCGIHSNLWQQWHYDYGIFTVLTAPLFLMPSYSLTTKTEEPFSASCYEEFPSPIGHTSLQIYDPNKNKVFMVKAPPESFIIQVGESADIISKGKLRSTLHSVYRPANFESLSRETFVVFLQPSWNKTFSSREYPQTKTTSNARCLMASDVEPQFGQDKSKLRDEIQRIVPPLSSRLKHGMTFAEFSRETTKQYYGGSGLQSNR 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1455 1199 CDD STKc_Nek 106 361 - -
Lele05g1455 1199 Gene3D Transferase(Phosphotransferase) domain 1 187 374 - -
Lele05g1455 1199 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Lele05g1455 1199 FunFam Serine/threonine-protein kinase Nek3 189 435 - -
Lele05g1455 1199 MobiDBLite consensus disorder prediction 640 658 - -
Lele05g1455 1199 SMART serkin_6 107 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele05g1455 1199 SUPERFAMILY Clavaminate synthase-like 787 1192 - -
Lele05g1455 1199 FunFam Serine/threonine-protein kinase Nek2 104 186 - -
Lele05g1455 1199 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 104 671 - -
Lele05g1455 1199 MobiDBLite consensus disorder prediction 415 439 - -
Lele05g1455 1199 MobiDBLite consensus disorder prediction 510 527 - -
Lele05g1455 1199 Gene3D - 763 1142 IPR027443 -
Lele05g1455 1199 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Lele05g1455 1199 ProSiteProfiles Protein kinase domain profile. 107 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele05g1455 1199 SUPERFAMILY Protein kinase-like (PK-like) 103 417 IPR011009 -
Lele05g1455 1199 MobiDBLite consensus disorder prediction 614 658 - -
Lele05g1455 1199 Gene3D Phosphorylase Kinase; domain 1 90 186 - -
Lele05g1455 1199 MobiDBLite consensus disorder prediction 472 527 - -
Lele05g1455 1199 Pfam Protein kinase domain 107 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele05g1455 1199 MobiDBLite consensus disorder prediction 472 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1455 Lele-ChrLele05 9336898 9345421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1455 113 362 MAP Kinase Kinase Kinase AT1G53570 31.373 7.47e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lele05g1455 Pkinase 2.6e-63 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1455 05 9336898 9345421 Lele05g1455 05 9336898 9345421 ECH
Lele05g1455 05 9336898 9345421 Lele07g1519 07 9336292 9344942 hybridization
Lele05g1455 05 9336898 9345421 Lele08g1307 08 8347585 8352161 hybridization