Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1446 ATGGTTCTACCTCAACAGCCGATACAGGGACTTCATGAAACAGGACCGCCTCCATTCCTCACCAAGACATTTGATATGGTGGACAACCCTTCAACCGATCACATAGTCTCGTGGAGCAGAGGAGGATCAAGTTTTGTTGTTTGGAATCCATGTTCTTTCTCTGCCAATCTCCTTCCTAGATGCTTCAAGCACAACAATTTCTCCAGCTTTGTCAGGCAATTGAACACTTACGGTTTTAGAAAAATTGACTCAGACAGATGGGAGTTTTCAAATGAAAAGTTCATCAGAGGACACAGGCATCTACTGAGGAACATACGAAGAAGGAGAGCACCTTCTCAGGTTTCTCAGGTTACTCCATCCTCCCAAAGACCGGGTCATTGTGTTGAAGTTGGTAGTTTTGGAGTAGAAGAAGAAATTATACGTTTAAGGCGTGACAAGCAAGTGTTAATGATGGAGCTTGTGAAGCTTAGACAACAGCAACAGAACACCAGAGCCTATGTTCAGGCGATGGAGCAGAGGTTACAAGGCACAGAAATGAAGCAGCAACAAATGATGGCTTTCTTAGCTAGAGCTTTGAAAAATCCTACTTTTCTCCACCAACTAGTCCAACAGAGTAAGACAAAGGAACTGGAAGAAGCCATGACTAAGAAAAGAAGAAGGTCAATTGAGCTAAGACCAATTGATGTTGCGGAATCAAGCAGTGAAAGTGAGGGAAGGAATAATCCTGTTAAAGTTGAAGCGTCTGAGCTTGAAGTTCTAGCTATGGAAATGCAAGGTCTAGGTAAGGGCGATGGAGGCAAAGGCGAATATGAAGATGAAGATATCGACGTCCTGGTTAAGCGCTTAGTAGACAACAGTGCAGATGAACGTTTTACAAGTGGGTTCGAAGCATATCGTCAAGTGGTGGTAACACTAAAATCTAAAACTGAGTTCCACAAAGTTGTGATATTGTGTAAGGATCTTGGGTTAGAAAATTCAGTGTAA 984 0.4268 MVLPQQPIQGLHETGPPPFLTKTFDMVDNPSTDHIVSWSRGGSSFVVWNPCSFSANLLPRCFKHNNFSSFVRQLNTYGFRKIDSDRWEFSNEKFIRGHRHLLRNIRRRRAPSQVSQVTPSSQRPGHCVEVGSFGVEEEIIRLRRDKQVLMMELVKLRQQQQNTRAYVQAMEQRLQGTEMKQQQMMAFLARALKNPTFLHQLVQQSKTKELEEAMTKKRRRSIELRPIDVAESSSESEGRNNPVKVEASELEVLAMEMQGLGKGDGGKGEYEDEDIDVLVKRLVDNSADERFTSGFEAYRQVVVTLKSKTEFHKVVILCKDLGLENSV 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1446 327 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele05g1446 327 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele05g1446 327 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele05g1446 327 MobiDBLite consensus disorder prediction 223 243 - -
Lele05g1446 327 Coils Coil 139 159 - -
Lele05g1446 327 SMART hsfneu3 15 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele05g1446 327 FunFam Heat shock transcription factor 1 12 109 - -
Lele05g1446 327 ProSitePatterns HSF-type DNA-binding domain signature. 58 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele05g1446 327 Gene3D - 11 109 IPR036388 -
Lele05g1446 327 SUPERFAMILY "Winged helix" DNA-binding domain 15 108 IPR036390 -
Lele05g1446 327 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 231 IPR027725 -
Lele05g1446 327 Pfam HSF-type DNA-binding 19 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1446 Lele-ChrLele05 9262962 9265928 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1446 6 269 HSF AT3G22830 52.941 3.09e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele05g1446 HSF_DNA-bind 1.4e-31 CL0123