Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1445 ATGTCCAATTCTACTACTTCTTTGTCCGTAGAATCCTCTGTCTCTTCTGCTACTAGACTTCATGACCTCTCTGGAGTAGTAAATCCCCTACTCCCCACAATTCCTGCTCAGCAGCCTCTAAAGATCAAGAAAAAGAGAAGCCTCCCAGGAAACCCAGACCCGGATGCAGAAGTGATAGCGTTATCTCCGAAGACTCTTTTGGCGACCAATAGGTTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGACCAGAATCTTCAACTTCATAGGAGAGGCCATAACCTGCCATGGAAGCTGAAGCAAAGGAACAACAAAGAGGTGAAAAAGAGAGCCTACGTTTGCCCCGAGCCTACATGCGTTCATCACAACCCCTCGAGGGCTCTGGGGGATCTCACAGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGCGAGAAATGCTCAAAGATCTACGCGGTTCAGTCAGATTGGAAAGCACACTCTAAAACCTGTGGAACTAGAGAATATAGATGTGATTGTGGAACTGTCTTCTCCAGGAAGGACAGCTTCATAACTCATAGAGCATTCTGTGATGCATTGGCAGAAGAAAGTGCAAGACTCTCAGCAAATCAAGTAGCCTCCACTACCAACACGAACCCACTGGTTCAATCTCTCTTGCTATATCCCACCCAACATAGCTTCCTCAATAATCCATGGAACCCATCTCCAGAAAACCCTAATCCCAGCAACGTTCTCCAAGTCAAGCCCGAAGCTCAGCATTTTCAGATGCGTCATTCGTTTCTTCAGGAACCTCATCATCATCCTGCTCACCACAAGAGCGCTCTGATAAACACACCCTTTCGGAGCCCAAACATGTTGTCCATGCAATCTTCCTCAAACGCTGCCACGTCAGCCCACCTTTCTGCTACTGCTCTCCTTCAAAAGGCTGCCACCGTCGGGGCCACCCCAATCACGCCCCAACCACCATCTCAGTCTCAGACTCATCAGCGTAGCATGAGCGAGTTCGGAGCAGTGAATCAGCTCGACTCGTTGGTGCCTGACTATGTGAGAGGGTTAACAACTCGGAATCTTAAGAATGAGCATCTGACAAGGGACTTCATGGGTCTCACCGACGATGGAAACAACGGAGGCGATGGCGAGAACGGCGGTGTGGTCAACCTGAAGAATGTCATGACTTTCACGGGGGATGTGTACGAGCACCACCATCACCACTCACTCTTCAAGTCCCGACAAGGTTTTGGATTCGTTGGGACTTCCAACGCCCCCGAGACGTGGAGCAATTATTGA 1305 0.4897 MSNSTTSLSVESSVSSATRLHDLSGVVNPLLPTIPAQQPLKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKRAYVCPEPTCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTVFSRKDSFITHRAFCDALAEESARLSANQVASTTNTNPLVQSLLLYPTQHSFLNNPWNPSPENPNPSNVLQVKPEAQHFQMRHSFLQEPHHHPAHHKSALINTPFRSPNMLSMQSSSNAATSAHLSATALLQKAATVGATPITPQPPSQSQTHQRSMSEFGAVNQLDSLVPDYVRGLTTRNLKNEHLTRDFMGLTDDGNNGGDGENGGVVNLKNVMTFTGDVYEHHHHHSLFKSRQGFGFVGTSNAPETWSNY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1445 434 FunFam protein indeterminate-domain 12-like 51 119 - -
Lele05g1445 434 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 391 IPR031140 -
Lele05g1445 434 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Lele05g1445 434 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Lele05g1445 434 SMART c2h2final6 72 94 IPR013087 -
Lele05g1445 434 SMART c2h2final6 113 143 IPR013087 -
Lele05g1445 434 SMART c2h2final6 148 168 IPR013087 -
Lele05g1445 434 Pfam Zinc finger, C2H2 type 72 94 IPR013087 -
Lele05g1445 434 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Lele05g1445 434 Gene3D Classic Zinc Finger 51 121 - -
Lele05g1445 434 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Lele05g1445 434 Gene3D Classic Zinc Finger 141 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1445 Lele-ChrLele05 9255579 9258503 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1445 6 423 IDZ Gene Family AT4G02670 49.192 1.57e-125 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele05g1445 zf-C2H2 0.0042 CL0361