Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1440 ATGTCCAATTCTACTACTTCTTTGTCCGTAGAATCCTCTGTCTCTTCTGCTACTAGACTTCATGACCTCTCTGGAGTAGTAAATCCCCTACTCCCCACAATTCCTCCTCAGCAGCCTCTAAAGATCAAGAAAAAGAGAAGCCTCCCAGGAAACCCAGACCCGGATGCAGAAGTGATAGCGTTATCTCCGAAGACTCTTTTGGCGACCAATAGGTTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGACCAGAATCTTCAACTTCATAGGAGAGGCCATAACCTGCCATGGAAGCTGAAGCAAAGGAACAACAAAGAGGTGAAAAAGAGAGCCTACGTTTGCCCCGAGCCTACATGCGTTCATCACAACCCCTCGAGGGCTCTGGGGGATCTCACAGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGCGAGAAATGCTCAAAGATCTACGCGGTTCAGTCAGATTGGAAAGCACACTCTAAAACCTGTGGAACTAGAGAATATAGATGTGATTGTGGAACTGTCTTCTCCAGGAAGGACAGCTTCATAACTCATAGAGCATTCTGTGATGCATTGGCAGAAGAAAGTGCAAGACTCTCAGCAAATCAAGTAGCCTCCACTACCAACACGAACCCACTGGTTCAATCTCTCTTGCTATATCCCACCCAACATAGCTTCCTCAATAATCCATGGAACCCATCTCCAGAAAACCCTAATCCCAGCAACGTTCTCCAAGTCAAGCCCGAAGCTCAGCATTTTCAGATGCGTCATTCGTTTCTTCAGGAACCTCATCATCATCCTGCTCACCACAAGAGCGCTCTGATAAACACACCCTTTCGGAGCCCAAACATGTTGTCCATGCAATCTTCCTCAAACGCTGCCACGTCAGCCCACCTTTCTGCTACTGCTCTCCTTCAAAAGGCTGCCACCGTCGGGGCCACCCCAATCACGCCCCAACCACCATCTCAGTCTCAGACTCATCAGCGTAGCATGAGCGAGTTCGGAGCAGTGAATCAGCTCGACTCGTTGGTGCCTGACTATGTGAGAGGGTTAACAACTCGGAATCTTAAGAATGAGCATCTGACAAGGGACTTCATGGGTCTCACCGACGATGGAAACAACGGAGGCGATGGCGAGAACGGCGGTGCGGTCAACCTGAAGAATGTCATGACTTTCACGGGGGATGTGTACGAGCACCACCATCACCACTCACTCTTCAAGTCCCGACAAGATCTTCGTAACCTGAATACTTAG 1275 0.4871 MSNSTTSLSVESSVSSATRLHDLSGVVNPLLPTIPPQQPLKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKRAYVCPEPTCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTVFSRKDSFITHRAFCDALAEESARLSANQVASTTNTNPLVQSLLLYPTQHSFLNNPWNPSPENPNPSNVLQVKPEAQHFQMRHSFLQEPHHHPAHHKSALINTPFRSPNMLSMQSSSNAATSAHLSATALLQKAATVGATPITPQPPSQSQTHQRSMSEFGAVNQLDSLVPDYVRGLTTRNLKNEHLTRDFMGLTDDGNNGGDGENGGAVNLKNVMTFTGDVYEHHHHHSLFKSRQDLRNLNT 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1440 424 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Lele05g1440 424 SMART c2h2final6 113 143 IPR013087 -
Lele05g1440 424 SMART c2h2final6 72 94 IPR013087 -
Lele05g1440 424 SMART c2h2final6 148 168 IPR013087 -
Lele05g1440 424 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Lele05g1440 424 FunFam protein indeterminate-domain 12-like 51 119 - -
Lele05g1440 424 Gene3D Classic Zinc Finger 141 205 - -
Lele05g1440 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Lele05g1440 424 Gene3D Classic Zinc Finger 51 121 - -
Lele05g1440 424 Pfam Zinc finger, C2H2 type 72 94 IPR013087 -
Lele05g1440 424 MobiDBLite consensus disorder prediction 29 53 - -
Lele05g1440 424 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Lele05g1440 424 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 392 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1440 Lele-ChrLele05 9207193 9210527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1440 6 380 IDZ Gene Family AT4G02670 52.185 2.16e-124 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele05g1440 zf-C2H2 0.0041 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1440 05 9207193 9210527 Lele13g2266 13 28776579 28779048 CCT
Lele05g1440 05 9207193 9210527 Lele14g2202 14 27120825 27123350 CCT
Lele05g1440 05 9207193 9210527 Lele15g0146 15 894153 896957 CCT
Lele05g1440 05 9207193 9210527 Lele16g0151 16 915661 918188 CCT
Lele05g1440 05 9207193 9210527 Lele07g1505 07 9219796 9222762 hybridization
Lele05g1440 05 9207193 9210527 Lele08g1298 08 8287927 8290993 hybridization