Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1434 ATGAACTGCTCCTGTTTACGCACAAATACGAAGAAATTGGAAATGGCGGGAAAAGGAGGCAAGGGGCTTTTGGCTGCAAAAACCACGACCGCTAACAAGGACAAAGATAAGGATAAGAAAAGGCCTGTTTCCAGGTCATCCCGTGCCGGAATCCAGTTTCCTGTGGGTCGTATTCATAGACAGCTGAAACAAAGGATCCAAGCAAATGGGCGTGTTGGGGCCACGGCTGCAGTTTACTTGGCCTCCATTCTTGAATACCTGACGGCTGAAGTTCTGGAGCTTGCTGGAAACGCAAGTAAAGATTTGAAGGTGAAGAGGATCACACCAAGGCATTTGCAGCTTGCTATCAGAGGAGATGAAGAACTTGACACCCTTATTAAGGGCACCATTGCTGGCGGGGGTGTCATCCCTCATATTCACAAGTCCCTCATCAACAAGACCTCCAAGGAATGA 453 0.4834 MNCSCLRTNTKKLEMAGKGGKGLLAAKTTTANKDKDKDKKRPVSRSSRAGIQFPVGRIHRQLKQRIQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1434 150 MobiDBLite consensus disorder prediction 30 45 - -
Lele05g1434 150 SUPERFAMILY Histone-fold 11 127 IPR009072 GO:0046982
Lele05g1434 150 PRINTS Histone H2A signature 100 114 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele05g1434 150 PRINTS Histone H2A signature 127 145 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele05g1434 150 PRINTS Histone H2A signature 86 99 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele05g1434 150 PRINTS Histone H2A signature 71 86 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele05g1434 150 PRINTS Histone H2A signature 41 63 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele05g1434 150 Gene3D Histone, subunit A 29 150 IPR009072 GO:0046982
Lele05g1434 150 FunFam Histone H2A 29 150 - -
Lele05g1434 150 SMART h2a4 30 150 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele05g1434 150 MobiDBLite consensus disorder prediction 29 50 - -
Lele05g1434 150 CDD H2A 41 146 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele05g1434 150 Pfam Core histone H2A/H2B/H3/H4 29 118 IPR007125 GO:0003677
Lele05g1434 150 PANTHER HISTONE H2A 35 146 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele05g1434 150 Pfam C-terminus of histone H2A 120 149 IPR032454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1434 Lele-ChrLele05 9125000 9126104 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1434 05 9125000 9126104 Lele13g1966 13 27151420 27152548 CCT
Lele05g1434 05 9125000 9126104 Lele14g1893 14 25459948 25461060 CCT
Lele05g1434 05 9125000 9126104 Lele15g0442 15 2567107 2568218 CCT
Lele05g1434 05 9125000 9126104 Lele16g0466 16 2542243 2543363 CCT
Lele05g1434 05 9125000 9126104 Lele07g1498 07 9144897 9146607 hybridization
Lele05g1434 05 9125000 9126104 Lele08g1292 08 8224840 8225748 hybridization