Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1427 ATGGCAAATAATCCTTCTGACGCCCCCGCCGACGACTTCCTCGAACAAATCCTTGGCCTCCCAACTTTTGCTTCCGCCGACTCCGGCTTAGCCGGTACGGCTGCTCCGCCTCCGATGATGCTGCAGCTCAACTCCGGCGACGGCACCGACCACCTTACTTCTGTTGGCGCTGGCGGCGGTAGTGGTGCCTTTCATGCACCGGTCTATCAGCTAGGCCTGAGCTTGGAGCAAGGGAAAGGAGGTTTTCTGAGGCCCGAGGAGGCTTCTGGAAGTGGGAAGCGATTTCGCGAAGACATCGTTGATAATAGAGCGAAGAATGTAAGACAAGTGTTTTTGCTTTTTGTTTCCCTTGTTTCCGTGTGCGTGGTTTTTCATGGTCAACCCTTGCCTAATACCATTCTCGCAGCTCCACATCAACCAGCAATGCGTCCAAGAGTCCGAGCTAGAAGAGGACAAGCTACAGATCCACACAGTATAGCTGAACGGTTGCGCAGAGAAAGAATAGCAGAAAGAATCAGGGCTTTGCAGGAACTTGTTCCTAGTGTCAATAAGACAGATAGAGCTGCCATGCTAGATGAAATTGTGGATTATGTCAAATTCTTGAGGCTTCAAGTTAAGGTTTTGAGCATGAGTAGGTTGGGCGGAGCTGGTGCAGTGGCACCACTGGTAACTGACATTCCATTATCATCAGTTGAGGAAGAAGGAAGTGAAGGTGGAAGAAATCAACCAGCTTGGGAGAAATGGTCAAACGATGGCACAGAAACACATGTGGCTAAGCTCATGGAAGAAAATGTCGGCGCTGCCATGCAGTTCCTTCAATCAAAGGCTCTTTGCATCATGCCCATCTCTCTGGCATCAGCGATATACCAGTCACAGCCACCGGACACCTCCAGTATAGTGAAGCCAGAAACTAACCCTCCTTCATAG 927 0.5027 MANNPSDAPADDFLEQILGLPTFASADSGLAGTAAPPPMMLQLNSGDGTDHLTSVGAGGGSGAFHAPVYQLGLSLEQGKGGFLRPEEASGSGKRFREDIVDNRAKNVRQVFLLFVSLVSVCVVFHGQPLPNTILAAPHQPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTETHVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDTSSIVKPETNPPS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1427 308 Gene3D - 147 209 IPR036638 GO:0046983
Lele05g1427 308 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 107 287 - -
Lele05g1427 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 211 IPR036638 GO:0046983
Lele05g1427 308 Pfam Helix-loop-helix DNA-binding domain 157 201 IPR011598 GO:0046983
Lele05g1427 308 SMART finulus 158 207 IPR011598 GO:0046983
Lele05g1427 308 FunFam Basic helix-loop-helix transcription factor 147 209 - -
Lele05g1427 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1427 Lele-ChrLele05 9066363 9069538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1427 64 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 76.210 1.03e-118 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele05g1427 HLH 1.1e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1427 05 9066363 9069538 Lele07g1491 07 9099913 9103549 hybridization
Lele05g1427 05 9066363 9069538 Lele08g1286 08 8175665 8179472 hybridization