Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1425 ATGGGTATCAGTTTTGACGGTGAGCTCATGAATCTGAAGGACACAGAGCTAAGGTTGGGATTGCCCGGAAGGGACGAGGAAGAAGATAAACGTTCATGCAGCGTCAGGAGCAACAAGAGGTGTTGGCACCAATCAAGTGAGGAAGAGGAATCCCCAGTAACGCAGAACAACGCCTGTAATAACAGTTCTGATGATCAAGTTAACGCCCCACTAGCAAAGGTACAAGTAGTGGGATGGCCACCGATTCGATCTTACAGGAAGAATTGTGTTCAACAACAAAAGAAGGGATCTCAAGACAGTGATGGGGCTGGAAATATGTATGTGAAAGTGAGCATGGACGGTGCTGCTTATCTGAGGAAGATAGATCTCAAGGTTTACAACAGCTACACACAGCTCCTCAAGGCCTTGCAGAACATGTTCAAGTGCACTTTTGGTGAGTACTCAGAAAGGGAAGGCTACAATGGATCTGAATACGCCCCTACTTATGAAGACAAGGATGGCGACTGGATGCTGGTTGGAGATGTTCCATGGAATATGTTCATGTCATCTTGCAAGAGGCTGAGAATCATGAAAGGATCGGAGGCTAAGGGATTGGGTGGTAGTTTATGA 609 0.4647 MGISFDGELMNLKDTELRLGLPGRDEEEDKRSCSVRSNKRCWHQSSEEEESPVTQNNACNNSSDDQVNAPLAKVQVVGWPPIRSYRKNCVQQQKKGSQDSDGAGNMYVKVSMDGAAYLRKIDLKVYNSYTQLLKALQNMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFMSSCKRLRIMKGSEAKGLGGSL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1425 202 SUPERFAMILY CAD & PB1 domains 97 191 - -
Lele05g1425 202 Pfam AUX/IAA family 38 199 IPR033389 -
Lele05g1425 202 ProSiteProfiles PB1 domain profile. 105 192 IPR000270 GO:0005515
Lele05g1425 202 Gene3D - 100 201 - -
Lele05g1425 202 MobiDBLite consensus disorder prediction 20 65 - -
Lele05g1425 202 MobiDBLite consensus disorder prediction 20 47 - -
Lele05g1425 202 MobiDBLite consensus disorder prediction 48 65 - -
Lele05g1425 202 FunFam Auxin-responsive protein 100 202 - -
Lele05g1425 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 196 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1425 Lele-ChrLele05 9057310 9058148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1425 108 198 B3 DNA Binding Superfamily AT2G46530 39.560 8.27e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele05g1425 AUX_IAA 5.9e-61 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1969 13 27165077 27167494 Lele05g1425 05 9057310 9058148 CCT
Lele15g0440 15 2551279 2553657 Lele05g1425 05 9057310 9058148 CCT
Lele16g0464 16 2526832 2529326 Lele05g1425 05 9057310 9058148 CCT
Lele05g1425 05 9057310 9058148 Lele07g1489 07 9090477 9091313 hybridization
Lele05g1425 05 9057310 9058148 Lele08g1284 08 8166182 8167025 hybridization