Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1424 ATGGAAGTGATAGGTGTGAAGAAAAAGAAGATGGGTTTCGAGGAAACAGAACTCAGGCTTGGATTGCCCGGAAATAATGGAGGAGCCACCGAACCGGAAGTCGTCAGAAAGAGAGGTTTCTCTGAAACTGAACCAGAGACTGTGGACTTGATGTTGAATCTCTCATCGTCTAAGGAATCAGCAGATCCATCTGAGAACCTCAAGAAGGAGAAGACCCTTCTGCCCTCTGACCCTGCTAAGCCTCCCTCCAAGGCACAAGTGGTGGGTTGGCCACCAGTGAGATCGTTCAGGAAGAACATATTAAAGAGCAGTGGAGAAGAGCACGAGAAAGGAAGCCCTAATAATGGAAGCTTCGTGAAAGTAAGCATGGATGGAGCTCCTTACCTTCGCAAAGTGGACCTCAAGTTGTACAACACTTACCAAGATCTCTATGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATTGGCAACTGTGGATCCCAAGGAATGAAGGATTTCATGAACGAGAGCAAGCTGATGAATCTCTTGAACAGCTCCGACTATGTCCCAACCTATGAAGACAAAGATGGCGACTGGATGCTTGTCGGCGACGTCCCTTGGGAGATGTTTGTTGAATCATGCAAGCGTTTGCGCATCATGAAAGGCAAGGAGGCTATCGGACTTGCTCCGAGAGCCATGGAGAAGTGCAAGAACAGAAGCTAG 705 0.4823 MEVIGVKKKKMGFEETELRLGLPGNNGGATEPEVVRKRGFSETEPETVDLMLNLSSSKESADPSENLKKEKTLLPSDPAKPPSKAQVVGWPPVRSFRKNILKSSGEEHEKGSPNNGSFVKVSMDGAPYLRKVDLKLYNTYQDLYDALAKMFSSFTIGNCGSQGMKDFMNESKLMNLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKCKNRS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1424 234 MobiDBLite consensus disorder prediction 20 88 - -
Lele05g1424 234 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 221 IPR003311 GO:0005634|GO:0006355
Lele05g1424 234 FunFam Auxin-responsive protein 111 226 - -
Lele05g1424 234 SUPERFAMILY CAD & PB1 domains 109 215 - -
Lele05g1424 234 Gene3D - 111 228 - -
Lele05g1424 234 Pfam AUX/IAA family 15 225 IPR033389 -
Lele05g1424 234 ProSiteProfiles PB1 domain profile. 116 216 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1424 Lele-ChrLele05 9046802 9048346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1424 103 224 B3 DNA Binding Superfamily AT4G23980 31.148 2.82e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele05g1424 AUX_IAA 2.2e-80 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1424 05 9046802 9048346 Lele07g1488 07 9080580 9082120 hybridization
Lele05g1424 05 9046802 9048346 Lele08g1282 08 8156090 8157673 hybridization