Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1419 ATGCAGGACCCCGAAGGTCTTGGAAAGGAGCGGCTTCTTGGAGATGTGGTAGGGTCTTGGGTGTTGAGAATGGCGTTTACAGGATCTGTGGCGGATCTTCAACCTACTTTAAAGAAGAAAACTGCGGTTTCAAGAAGCTGGATTCTTCTGGACCGCAATGGCAGCGGCACTGTGTTGGATGTGGACAAGTACGCTATTATGCGCCTGGTTGAAATTAACGCGAGAGATCTTCGAATTCTTGATCCGCTGTTATCGTATCCTTCTACTATTTTGGGTAGAGAGAAGGTCATTGTCCTCAATTTAGAGCATATCAAAGCTATTATCACCGCAGAGGAGGTGTTACTCAGAGACCCGCTGGATGATGATGTTATTCCTATTGTCGAGCAACTTCAAAGAAGGTTGCCCAAAGTGTCTGGTACACGGCAAGGCCAAGGAGAAGGAGAAGAGACATGTGCCCAAGAAGTTGAAGGCGACGAAGAAAATGAATTTCCGTTTGAATTCCGTGCCCTGGAGGTTGCATTAGAGGCAATTTGTAGTTTTCTTGATGCGCGGACGAGAGAGTTAGAGACTGCTGCTTATCCAGCTTTAGATGAGCTCACCTCTAAGATTAGCAGTCGTAACTTGGATAGAGTACGCAAACTGAAAAGTGCAATGACCACGTTGACAAATAGAGTTCAAAAGATAAGAGATGAACTAGAAAATCTACTTGATGATGATGATGATATGGCCGACCTTTACTTATCGAGAAAGATGGCTGGCTCATGTTCCCCTACTAGTAGCTGTGATGCTCCCAATTGGATTCTTAGCTCTCCAACTATAGGCTCAAGGGTCCGTAGATCAAGCAGAGCAAGTGCAACAACATTTCAAGGGGAGAATGATGTTGAGGAGCTTGAAATGTTACTTGAGGCTTATTTCATGCAAATTGATGGCACATTAAATAAACTGACCACACTGCGAGAATATATTGATGACACGGAAGATTACATCAACATACAGCTTGACAATCACCGAAACCAGCTGATTCAGCTAGAGCTCTTCCTCAGTTCTGGGACTGTGTGCTTGTCCATATATTCCTTGGTGGGTGCAATATTTGGCATGAACATCCCGTACACATGGAGAGAAGGACACAGTTATATGTTCAAATGGGTGGTAATCTTTACGGGAATATTCTGTGGATCCTTGTTTTTGTCCATAGTATCATATGCTCGACGCAAAGAAATTGAAAATGAAAATATTAAATTGGTGCGAACTAACAAGATTATTTTGAAATTGGGTCAGGATAGACAAAAAGCAATAGGAATGCAGAAAATTGAGCATGCTAATCATTTGGTTAATGCCGATGATTACAACGAAATGGACGTAGTCAAAGTGAAGAGGGAAACGATTGCAGCATGCATGACCTGCCCACTCTGCAACGAGTTGTACAAGGAGGCCACCACTATATCTGAATGCCTGCATACGTTTTGCAGGAAGTGCATATATGACAAAATTACAGATGAGGAATTGGAATGCTGTCCAATCTGCAATATTGATTTAGGCTGTGCTCCGCTGGAGAAATTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCTAAAATTTTCCCTTTGAAGCAAACAAAGGAAAAGGAACCAGAAGTTGTCCCCCCAGAACCATTACCAGCTAGAAGAAAGGAAAGATCACTTTCATCTTTGGTTGTCAGCACTCCCAGAGTATCATCAACACAGGCAACCATGACAGGAAGAAGAACAAAGCCTACAAGAAAGGCTAGTGCTCGCTCCACTAGTTTTTCCGTCGGAAAAACCATTATAAAGGAGGAAGATTCAGTGGAAGATCATCCAGAGAGTTCAAGCTCCCCCGATACCTCCAACAAGGTTTCTCAGACTACTAGACAGAACTCGTCCCCTCATGATGCAAGCCAATCTGTTCCCAATAAGGAGAAAAATAATGGGGATCAATCTTGGGAAGCAAAGGATCTTTGGAAACCTTTGAATTGTTTGGTGGAGATTGCAAGTAGGAGTAAATCTTTCAAGTCCAACATACAAGGATGTGATGCTAAACAAGAACCCACTCAAATAAATGAGAATGATTCTCAAGTACAAAAGCCCAAAATTAAGGACAACAGGCGAAAGTCAAAAGTTGAGGATGAAAAGATCGTCACTGATCCTGCTTCTCCAGATACAGAAAAAGCAAATAAATCGCGCAGAAATCGCCGAAAGAAGGAACCTGTTGTGGGTGAATCAAGCATATCACCCCAAGCTGTGCTGGATGCAAACAGTGCTAAAATGAAAGAAAGAACTGGTCCAATATGGTTCTCCTTAGTAGCCTCTGAAGACCAGGACAAAGATGCACCACTACCACAAATTTCTGCAAATTACTTAAGAATAAAGGATGGAAACATGCCAGTCTCATTTATCCAGAAGTACCTGATGAAGAAATTAAATCTGGCCAGTGAAGATGAGGTTGAGATTAAATGCATGGGACAACCAGTGGTCCCTACACTGCAACTGAATAACTTGGTTGACTTGTGGCTGCAAACAGCATCGCCATCACAGAGAATCCCAGTAGCCATTGGATCATCAGCAAAAGATTTTGTTATGGTTCTGACGTATGCTCGTAAGCAGGCCCCGCCGCCTTGA 2637 0.4304 MQDPEGLGKERLLGDVVGSWVLRMAFTGSVADLQPTLKKKTAVSRSWILLDRNGSGTVLDVDKYAIMRLVEINARDLRILDPLLSYPSTILGREKVIVLNLEHIKAIITAEEVLLRDPLDDDVIPIVEQLQRRLPKVSGTRQGQGEGEETCAQEVEGDEENEFPFEFRALEVALEAICSFLDARTRELETAAYPALDELTSKISSRNLDRVRKLKSAMTTLTNRVQKIRDELENLLDDDDDMADLYLSRKMAGSCSPTSSCDAPNWILSSPTIGSRVRRSSRASATTFQGENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVGAIFGMNIPYTWREGHSYMFKWVVIFTGIFCGSLFLSIVSYARRKEIENENIKLVRTNKIILKLGQDRQKAIGMQKIEHANHLVNADDYNEMDVVKVKRETIAACMTCPLCNELYKEATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCAPLEKLRPDHSLQDVRAKIFPLKQTKEKEPEVVPPEPLPARRKERSLSSLVVSTPRVSSTQATMTGRRTKPTRKASARSTSFSVGKTIIKEEDSVEDHPESSSSPDTSNKVSQTTRQNSSPHDASQSVPNKEKNNGDQSWEAKDLWKPLNCLVEIASRSKSFKSNIQGCDAKQEPTQINENDSQVQKPKIKDNRRKSKVEDEKIVTDPASPDTEKANKSRRNRRKKEPVVGESSISPQAVLDANSAKMKERTGPIWFSLVASEDQDKDAPLPQISANYLRIKDGNMPVSFIQKYLMKKLNLASEDEVEIKCMGQPVVPTLQLNNLVDLWLQTASPSQRIPVAIGSSAKDFVMVLTYARKQAPPP 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1419 878 MobiDBLite consensus disorder prediction 699 732 - -
Lele05g1419 878 Pfam Zinc finger, C3HC4 type (RING finger) 468 508 - -
Lele05g1419 878 ProSitePatterns Zinc finger RING-type signature. 484 493 IPR017907 -
Lele05g1419 878 MobiDBLite consensus disorder prediction 561 601 - -
Lele05g1419 878 SUPERFAMILY RING/U-box 463 532 - -
Lele05g1419 878 CDD Mrs2_Mfm1p-like 47 405 IPR039204 -
Lele05g1419 878 MobiDBLite consensus disorder prediction 537 653 - -
Lele05g1419 878 MobiDBLite consensus disorder prediction 537 557 - -
Lele05g1419 878 MobiDBLite consensus disorder prediction 615 649 - -
Lele05g1419 878 Gene3D Magnesium transport protein CorA, transmembrane region 127 340 - -
Lele05g1419 878 FunFam Magnesium transporter MRS2-1 35 118 - -
Lele05g1419 878 SMART ring_2 468 508 IPR001841 -
Lele05g1419 878 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 453 876 IPR044807 GO:0004842
Lele05g1419 878 ProSiteProfiles Zinc finger RING-type profile. 468 509 IPR001841 -
Lele05g1419 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 550 IPR013083 -
Lele05g1419 878 MobiDBLite consensus disorder prediction 137 157 - -
Lele05g1419 878 Gene3D - 32 118 - -
Lele05g1419 878 MobiDBLite consensus disorder prediction 685 752 - -
Lele05g1419 878 Coils Coil 211 238 - -
Lele05g1419 878 Pfam CorA-like Mg2+ transporter protein 296 396 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1419 Lele-ChrLele05 9002375 9013182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1419 24 383 MRS2 Gene Family AT5G64560 73.098 1.68e-162 477
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1419 05 9002375 9013182 Lele07g1482 07 9040489 9043865 hybridization
Lele05g1419 05 9002375 9013182 Lele08g1274 08 8106148 8117740 hybridization