Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1417 ATGAATGTAATGCCTTTTCCAATGGTAAATATTGTCTGTATTCCACTTTTGATGATAAAAGTTGGTTTGGACCATCGAGCTAGCTACCAAGTGCACCCAGATCAAGCCAGCCTCCAGGTGGAGTGGGCGCGCGCGTGCTCGGAGGAAGGTTTAGTTCCACTATTTAAAATGTTTATTCCTAGAAAAGTGTTGGGATGGAAAAATGAATTTATGATAATGAGGCATGTATATGGGGAGGAGAATACTATGAATGAAGGGTACAAGACAGGAAGGGAAGGGGGAAGGAAGAGTGGGGATGGAGGCGTCCGCAAGCGTCCCTGGGGCAGATTCGCCGCCGAGATCCGCGATCCATGGAAGAAGACGCGCAAATGGCTTGGAACCTTTGACACCGCCGAGGAGGCTGCTCGGGCCTACGATGAGGCTGCCAGGACTCTTCGTGGACCCAGGGCCAAGACGAACTTCGTCTATGCTGCTGTTCCCGTCACAACGTCGCTCCCGATGCCATCGGCGGCGGCCTCTACTGCCTGTGGCGGTGATGGTGGAGAGATGTCTGGGAGGCCCGTGGAGTTTTGGAGGGCTCCAGCGTATCATGCGGCGGGCGCCACCGCAGGAGTGCCGGTGAGATCCGGGTATAAGGGATACGAGTTGGAGAATGTGGATGTGGCGGTGGGCGAGGAGAGAAAGGTGCGAAAAGAGAAGAAACCGTTGATGCTCGATCTTAACCAACCACCACCACTCTTTTGA 744 0.5376 MNVMPFPMVNIVCIPLLMIKVGLDHRASYQVHPDQASLQVEWARACSEEGLVPLFKMFIPRKVLGWKNEFMIMRHVYGEENTMNEGYKTGREGGRKSGDGGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDEAARTLRGPRAKTNFVYAAVPVTTSLPMPSAAASTACGGDGGEMSGRPVEFWRAPAYHAAGATAGVPVRSGYKGYELENVDVAVGEERKVRKEKKPLMLDLNQPPPLF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1417 247 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Lele05g1417 247 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Lele05g1417 247 CDD AP2 101 154 IPR001471 GO:0003700|GO:0006355
Lele05g1417 247 Gene3D AP2/ERF domain 100 156 IPR036955 GO:0003700|GO:0006355
Lele05g1417 247 ProSiteProfiles AP2/ERF domain profile. 98 155 IPR001471 GO:0003700|GO:0006355
Lele05g1417 247 SMART rav1_2 101 161 IPR001471 GO:0003700|GO:0006355
Lele05g1417 247 SUPERFAMILY DNA-binding domain 100 155 IPR016177 GO:0003677
Lele05g1417 247 FunFam ethylene-responsive transcription factor RAP2-11 99 156 - -
Lele05g1417 247 Pfam AP2 domain 101 147 IPR001471 GO:0003700|GO:0006355
Lele05g1417 247 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 101 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1417 Lele-ChrLele05 8983217 8986615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1417 101 246 AP2-EREBP Transcription Factor Family AT5G44210 40.805 8.23e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele05g1417 AP2 1.7e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1417 05 8983217 8986615 Lele07g1477 07 9016606 9017130 hybridization
Lele05g1417 05 8983217 8986615 Lele08g1271 08 8086417 8086965 hybridization