Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1407 ATGGAGTTCAGGTACCCAGGAGAGTCAAAGAGCTGGAGAGAAGAAAGTGATGATGAACGACCGGAGAATAACAATGATGAAAGGGGAAGTGGAAGATCCTACGAGTGTGTGTTTTGCAAGAGAGGATTCACCACAGCACAAGCTTTGGGTGGACACATGAATATTCACAGGAAAGATAGAGCCAAATCCAGCAAACCCAGTAATTTTCCTGCTTCCACTTCAACCAAAGGGCTTGACGACCATGAGATCGACCATGCACTTTCAAGTTTTCCACCACCTGGGAATTACTTATTATTAGATCACAACAGTAATAATTATAATTACCCTCCGTCCCAAATTTCTTTTCCTGCTGTACATCAAAGGGATCGGGACTTGTTCGGAGGAGATTATAATTGGAGGACGGGTTTGAGTTTGTCTAATCCACTTTATGGGCGTGATAATAAAGACAAGACTGGAGGTAGCAGTGAAGAAGATGGTCTCGATTTGGAGCTTCGATTGGGTTATCATTCCTAA 513 0.4308 MEFRYPGESKSWREESDDERPENNNDERGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKSSKPSNFPASTSTKGLDDHEIDHALSSFPPPGNYLLLDHNSNNYNYPPSQISFPAVHQRDRDLFGGDYNWRTGLSLSNPLYGRDNKDKTGGSSEEDGLDLELRLGYHS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1407 170 MobiDBLite consensus disorder prediction 1 29 - -
Lele05g1407 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Lele05g1407 170 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Lele05g1407 170 MobiDBLite consensus disorder prediction 1 32 - -
Lele05g1407 170 PANTHER OS07G0101800 PROTEIN 9 169 - -
Lele05g1407 170 SUPERFAMILY beta-beta-alpha zinc fingers 31 60 IPR036236 -
Lele05g1407 170 Gene3D Classic Zinc Finger 15 86 - -
Lele05g1407 170 MobiDBLite consensus disorder prediction 57 87 - -
Lele05g1407 170 Pfam C2H2-type zinc finger 34 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1407 Lele-ChrLele05 8897328 8897840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1407 32 169 C2H2 Transcription Factor Family AT4G17810 38.095 1.57e-14 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele05g1407 zf-C2H2_6 1.4e-05 CL0361