Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1404 ATGCCCAATACGCACACATACAAGGGACGGTGGGGGGTTCCGCCTCAAAATAAAATAACTGCTGCTTCTGAACTGAAGCCTGAAATCGACGCTATTATCGTCATGGCATCCATGGATGACGGCGCCTTCGTTTCCTCGCCGGACATGGAAAAGTTCCTCTGTGAATTATTACTGGATTCCACGCAACCGATTTCTGAGCGCTTCAGGGCTCTCTTCTCTCTCCGCAATCTCAAGGGTCCCTCCCCTCGCAACGCCCTTATTCTCGCCACAAGGGATTCTTCAAATTTGTTGGCACACGAGGCTGCATTTGCACTTGGTCAAATGCAAGATGTGGAAGCCATCCCTGCTTTGGCGTCAGTTTTAAATGATCTTTCTTTGCATCCCATTGTTCGTCATGAGGCCGCAGAAGCTCTTGGTGCTATTGGTTCAGATTGTAATGTTCCTCTACTGAAGAATAGTTTGTGTTTAGATCCAGCTCAGGAGGTTCGGGAAACATGTGAATTGGCTCTTCAACGTATTGAGCATTTGAAAGATGCTGGCAGTAGTGATGAATTGTCTGTAACTGATGCATCACCTTTTAAGTCTGTTGATCCTGCAGCACCAGCTGCCTCATGTTCTTCTGCGGATCAATTAAGGAAAGTACTTCTGGATGAAGAAAAAGGAATGTATGAACGTTATGCGGCCCTTTTTGCCCTTCGAAATGATGGTGGAAATGAAGCTGTTGCTGCTATAATTGATTCCTTGGGTTCCAAAAGTGCTCTGCTTCGCCATGAGGTTGCTTATGTTTTGGGCCAATTACAAAACAGAGTTGCTTCGGCTGCACTATCCAATATACTTAAGGATGGGAATGAGCATCCAATGGTCAGACATGAAGCTGCCGAAGCTCTGGGTTCAATTGCAGATGACCGAAGTGTAGCACTTCTGGAGGAATTTGTGGCAGATCCAGAGCCTCTTGTCTCACAAAGCTGTCAAGTTGCTCTGAGTATGCTAGAATTTGAACGATCAGGGAAATCTTTTGAGTTCTTCTTCATGCGCACGCCACTTGTTGAATAA 1053 0.4596 MPNTHTYKGRWGVPPQNKITAASELKPEIDAIIVMASMDDGAFVSSPDMEKFLCELLLDSTQPISERFRALFSLRNLKGPSPRNALILATRDSSNLLAHEAAFALGQMQDVEAIPALASVLNDLSLHPIVRHEAAEALGAIGSDCNVPLLKNSLCLDPAQEVRETCELALQRIEHLKDAGSSDELSVTDASPFKSVDPAAPAASCSSADQLRKVLLDEEKGMYERYAALFALRNDGGNEAVAAIIDSLGSKSALLRHEVAYVLGQLQNRVASAALSNILKDGNEHPMVRHEAAEALGSIADDRSVALLEEFVADPEPLVSQSCQVALSMLEFERSGKSFEFFFMRTPLVE 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1404 350 SMART E-Z type HEAT repeats 286 315 IPR004155 -
Lele05g1404 350 SMART E-Z type HEAT repeats 222 251 IPR004155 -
Lele05g1404 350 SMART E-Z type HEAT repeats 95 124 IPR004155 -
Lele05g1404 350 SMART E-Z type HEAT repeats 253 282 IPR004155 -
Lele05g1404 350 SMART E-Z type HEAT repeats 64 93 IPR004155 -
Lele05g1404 350 SMART E-Z type HEAT repeats 128 157 IPR004155 -
Lele05g1404 350 Coils Coil 159 179 - -
Lele05g1404 350 PANTHER PBS LYASE HEAT-LIKE PROTEIN 52 335 - -
Lele05g1404 350 Pfam HEAT repeats 86 170 - -
Lele05g1404 350 Gene3D - 194 338 IPR011989 -
Lele05g1404 350 FunFam Deoxyhypusine hydroxylase 42 191 - -
Lele05g1404 350 SUPERFAMILY ARM repeat 32 173 IPR016024 -
Lele05g1404 350 Hamap Deoxyhypusine hydroxylase [DOHH]. 50 340 IPR027517 GO:0008612|GO:0019135
Lele05g1404 350 FunFam Deoxyhypusine hydroxylase 199 340 - -
Lele05g1404 350 SUPERFAMILY ARM repeat 128 329 IPR016024 -
Lele05g1404 350 Pfam PBS lyase HEAT-like repeat 288 314 IPR004155 -
Lele05g1404 350 Gene3D - 30 190 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1404 Lele-ChrLele05 8882404 8885392 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1404 05 8882404 8885392 Lele07g1465 07 8921373 8940479 hybridization
Lele05g1404 05 8882404 8885392 Lele08g1256 08 8000560 8004974 hybridization