Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1396 ATGAGCTCCTCAAATGCCAAGCCTTTGCCTTTTAAGTCTAAGAAGCCCCATGTCTGTCATTCAGCTTCCAAATCCCAATCATCAGATCCCATTTCGTTGAGCTCCAAAACTCCAGAGAAGGCCTCACAGCTCTCACACCGTACCCGAAACCGGGGCGTTGCGCTCTCCATTAGAGAAGTCAGGAAAGTCGCTGAAAGCCTCCAGGAACAGAAAGGCCAGCGGCAATATAATGATCGAACTGAGAAGATCAAGTCCGCCCGAAGGAAGATTGCCCCGTCTTTGGCCGAAATGTCCCCCCGCAAATCCAAGGCATCTGTGGATGAGCCTATCAAGCTGCCGGAAAAGTATGAAATTTTGGGCGAGTTCTTTGACAGCTTGGATAGCTCGATCCGATTGTTGCGCTTGAAAGGTTCCTCAACAACTTTCACGAATATCTGCCCCAAAATTGAATGTTTAACTGATAGGAGATTTACGCACAGTCATCTGGCCCAGTTGAAATATATCTTTCCCGAGGCACTTGTTATAAAGAAGGTGCTCAGGTTGGATGAACGAACAAGCTGTATGAAGCCAGACCTCCATCTTTCAATAAATCCCGATTCAAAGTTGTTTTCTGAAGGTGGAAGTGTGTCCTTGCGAAAGTTATTTCGCACACGGTTAAGAGATTTTTATGAATCACATCCTGAGGTTGATGAAATTCCAGAAAAAATGCTGCCTGAGCCATTCAGTCACCGTAAGCAAGATCGTCCTTTAGAAACATTGAGAACTACCTCATCATCTGCTACAATACCATCAAATGATGCTGTAACACCTCATCACGGAGCTGCAGAACCTGCATCCGTGCAAGGTAATGCCATGGTAATCAATTCAGAGCCTGCTAAGGGAGAAGAAAACTTGTCAATTCCTGTTAACACTTCAATTGGAGCACATCATCAACAACCAGCTTTAGCCACTCATATGTCTCAATCTTTTAAAAGACGGTTTTCTCAGAAATCTGTAAAAGATGAAGCAGATGATGTGCAACAAAAGTCACCATCAGGTTCATTACCTCCTCAATCTGTCCCAATTTCAGAATCAAGCGTGAAGAAAAATTCATCAAGTGTAGACACAAGTATGTGCCCAACAATATGTGCTTCTCCGGCTAATCTCAAATCATATGGTTCTTCAGTTGCCACTCCAAATAAAGTTGCTTGTACTCCATCTAGGCTGATGATTCATACACCTTCATTGCCAACTCCTAAGAGATGTTACATGAGCCCGGACGACAGCTTTTGCAGCTCACCAAACAAGTTGGTTAGGCGTCCAACTAGATTGAAGAAGTCATTGAACTTTGACACTCCAGTGAAAAATCGGAGGACAGAGAATGAAGCTGATGATGCTGGTGGCTTATCAAGTGATGATGATATTTTTGATATTCTCCCGGAGAGTCTTCTTCAATCGATTAAAGAAAAGGAGAGAGTGGCAATGGAGGAAAGAAATCCGGCAATCGCACAAGCAAAAAGACGGCAAAAAATGATCGCCTGCCTTCCAAAGCTATTTAATATGATTAATCTCTTGATTCATTCAATGAATCGTTCTGTTGTCACAACAGAGGAGCTTCTAAGCAAGATAATCTCAAACCATTGTGATGTTGTTGACCGGAGAGAAGTTGAAGAGCAGCTGAATTTGTTGCTAGAACTAGTTCCAGAATGGATTTCTGAAAAGTTGGCATCTAGTGGAGATCTGCTCTTCTGCATAAATAAAATCCAGAACCCCGAGTCCATACGATCACAGCTTGCAGAAGCAAAGTGA 1788 0.4318 MSSSNAKPLPFKSKKPHVCHSASKSQSSDPISLSSKTPEKASQLSHRTRNRGVALSIREVRKVAESLQEQKGQRQYNDRTEKIKSARRKIAPSLAEMSPRKSKASVDEPIKLPEKYEILGEFFDSLDSSIRLLRLKGSSTTFTNICPKIECLTDRRFTHSHLAQLKYIFPEALVIKKVLRLDERTSCMKPDLHLSINPDSKLFSEGGSVSLRKLFRTRLRDFYESHPEVDEIPEKMLPEPFSHRKQDRPLETLRTTSSSATIPSNDAVTPHHGAAEPASVQGNAMVINSEPAKGEENLSIPVNTSIGAHHQQPALATHMSQSFKRRFSQKSVKDEADDVQQKSPSGSLPPQSVPISESSVKKNSSSVDTSMCPTICASPANLKSYGSSVATPNKVACTPSRLMIHTPSLPTPKRCYMSPDDSFCSSPNKLVRRPTRLKKSLNFDTPVKNRRTENEADDAGGLSSDDDIFDILPESLLQSIKEKERVAMEERNPAIAQAKRRQKMIACLPKLFNMINLLIHSMNRSVVTTEELLSKIISNHCDVVDRREVEEQLNLLLELVPEWISEKLASSGDLLFCINKIQNPESIRSQLAEAK 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1396 595 CDD Cdt1_m 98 250 IPR014939 -
Lele05g1396 595 Pfam DNA replication factor CDT1 like 112 198 IPR014939 -
Lele05g1396 595 PANTHER DNA REPLICATION FACTOR CDT1 14 595 IPR045173 GO:0003677|GO:0030174|GO:0071163
Lele05g1396 595 MobiDBLite consensus disorder prediction 441 464 - -
Lele05g1396 595 MobiDBLite consensus disorder prediction 20 41 - -
Lele05g1396 595 MobiDBLite consensus disorder prediction 241 282 - -
Lele05g1396 595 Pfam DNA replication factor Cdt1 C-terminal domain 475 567 IPR032054 -
Lele05g1396 595 Gene3D - 464 595 IPR038090 -
Lele05g1396 595 MobiDBLite consensus disorder prediction 252 266 - -
Lele05g1396 595 MobiDBLite consensus disorder prediction 309 368 - -
Lele05g1396 595 CDD Cdt1_c 471 592 IPR032054 -
Lele05g1396 595 SMART CDT1_2 112 239 IPR014939 -
Lele05g1396 595 MobiDBLite consensus disorder prediction 341 368 - -
Lele05g1396 595 MobiDBLite consensus disorder prediction 309 326 - -
Lele05g1396 595 MobiDBLite consensus disorder prediction 441 458 - -
Lele05g1396 595 MobiDBLite consensus disorder prediction 1 53 - -
Lele05g1396 595 SUPERFAMILY "Winged helix" DNA-binding domain 104 241 IPR036390 -
Lele05g1396 595 FunFam CDT1-like protein a chloroplastic 465 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1396 Lele-ChrLele05 8819333 8822159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1396 5 593 Core DNA Replication Machinery Family AT2G31270 41.176 8.19e-114 349