Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1386 ATGATTGACAAGGAGACAAATCAACCGCCTGTGAGTTGGGAAACCATAGAAGGCGGCCTGACTGTCAAGGAAAGATCATACATAGGGGTGAGGAAGAGACCCTGGGGCAAATTTGCAGCAGAGATCAGAGACAACAGCAGGAATGGCACCAGGGTTTGGCTGGGAACATTCAAGAGTGCAGATCAGGCTTCTTTAGCTTATGACCAAGCTGCATTCACCATGAGAGGCAGCACCGCTGTTCTTAATTTTCCTGTGGAAAAGGTGAAGGAGTCTCTGCAACACATCAAGTACGGCTGCCGCAAAGGGTGTTCAACGGCTTTATCCCTAAAAGAGAGGCACTGCATGCAAAGAAAACTGTCGTCAAAGGCTAAGAAGGACAAAGCCAAACATCAATCAGAGGCGGTGGTGCTTGAGGATTTGGGTGTTGAATATCTGGAGCAACTTCTCAGCTTATCTGATCAAACTACAAACCCTAGGTAG 480 0.4771 MIDKETNQPPVSWETIEGGLTVKERSYIGVRKRPWGKFAAEIRDNSRNGTRVWLGTFKSADQASLAYDQAAFTMRGSTAVLNFPVEKVKESLQHIKYGCRKGCSTALSLKERHCMQRKLSSKAKKDKAKHQSEAVVLEDLGVEYLEQLLSLSDQTTNPR 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1386 159 SMART rav1_2 26 90 IPR001471 GO:0003700|GO:0006355
Lele05g1386 159 FunFam Ethylene-responsive transcription factor 2 25 86 - -
Lele05g1386 159 Gene3D AP2/ERF domain 26 86 IPR036955 GO:0003700|GO:0006355
Lele05g1386 159 ProSiteProfiles AP2/ERF domain profile. 26 84 IPR001471 GO:0003700|GO:0006355
Lele05g1386 159 PANTHER DNA-BINDING DOMAIN 23 152 IPR044808 GO:0003700|GO:0009873
Lele05g1386 159 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
Lele05g1386 159 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Lele05g1386 159 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Lele05g1386 159 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Lele05g1386 159 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1386 Lele-ChrLele05 8740174 8740653 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1386 24 155 AP2-EREBP Transcription Factor Family AT3G23240 58.394 4.00e-54 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele05g1386 AP2 9.2e-13 CL0081