Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1384 ATGGATTCAGATTCCTTTTTCTGGCAATACCCGCAACCTGACTGCTCCCCTCTAGATTCCTTTGTTTCTGATGCAGTATCTTTCTCCTCCTGGGACGATGACCTCTGGCTCTTCAACCACGACTACAACAACTACTACTTCCCTCAACACCATGCCTTGTCTTCCGATGTTACGGCCAAGGATTCGTCGTCTTCCGACTCCAATTCTTCAGCCCTGGAGGCCGCAGTGCAACAAGAAGTCTCCTCCGGTTTCACCTGCCCCAAAGTTGAGGTGAGGGAAGAAGCGTCGCCTCCGCCGGCCCTGGCCACTGTGGACGATCAGAAGAGGGTGTACAGAGGAGTGAGGAGGCGGCCGTGGGGGAAATACGCGGCGGAGATAAGGGACTCCACCAGAAAAGGGGTGAGAGTGTGGATCGGAACATTTGACACGGCGGAGGAAGCCGCTTTGGCGTATGATCAGGCGGCATTGTCCACAAGGGGATCACAGGCGGTACTCAATTTCCAGGAGGAAGTGGTAAGAGAGTCGCTGAGGAAGATGCCGTACAAGACCTGGCAAGAAGCTTGCTCTCCGGTGTTGGCCCTCAAGAAGAAACACACCACCAAACGAAAGTCCAAGAAGTCAAGAACTCCTCCTCCGGCCAAAACCCAGATCGATTCTACTCATAAGGGTGTGTTGGTTCTGGAGGATTTGGGAGCCGAATATCTGGATCAGCTTCTGGCCCTCACAACTCAATATTGA 738 0.5339 MDSDSFFWQYPQPDCSPLDSFVSDAVSFSSWDDDLWLFNHDYNNYYFPQHHALSSDVTAKDSSSSDSNSSALEAAVQQEVSSGFTCPKVEVREEASPPPALATVDDQKRVYRGVRRRPWGKYAAEIRDSTRKGVRVWIGTFDTAEEAALAYDQAALSTRGSQAVLNFQEEVVRESLRKMPYKTWQEACSPVLALKKKHTTKRKSKKSRTPPPAKTQIDSTHKGVLVLEDLGAEYLDQLLALTTQY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1384 245 Pfam AP2 domain 110 160 IPR001471 GO:0003700|GO:0006355
Lele05g1384 245 ProSiteProfiles AP2/ERF domain profile. 110 168 IPR001471 GO:0003700|GO:0006355
Lele05g1384 245 SUPERFAMILY DNA-binding domain 110 169 IPR016177 GO:0003677
Lele05g1384 245 FunFam Ethylene-responsive transcription factor 2 109 169 - -
Lele05g1384 245 PANTHER DNA-BINDING DOMAIN 69 239 IPR044808 GO:0003700|GO:0009873
Lele05g1384 245 MobiDBLite consensus disorder prediction 195 209 - -
Lele05g1384 245 SMART rav1_2 110 174 IPR001471 GO:0003700|GO:0006355
Lele05g1384 245 CDD AP2 111 169 IPR001471 GO:0003700|GO:0006355
Lele05g1384 245 MobiDBLite consensus disorder prediction 195 217 - -
Lele05g1384 245 Gene3D AP2/ERF domain 110 170 IPR036955 GO:0003700|GO:0006355
Lele05g1384 245 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Lele05g1384 245 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1384 Lele-ChrLele05 8723775 8724512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1384 108 240 AP2-EREBP Transcription Factor Family AT3G23240 56.391 6.35e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele05g1384 AP2 7e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1384 05 8723775 8724512 Lele14g1858 14 25225250 25225927 CCT
Lele05g1384 05 8723775 8724512 Lele15g0482 15 2823323 2824006 CCT
Lele05g1384 05 8723775 8724512 Lele16g0503 16 2781219 2781899 CCT
Lele05g1384 05 8723775 8724512 Lele05g1384 05 8723775 8724512 ECH
Lele05g1384 05 8723775 8724512 Lele07g1449 07 8779811 8780557 hybridization
Lele05g1384 05 8723775 8724512 Lele08g1239 08 7868554 7869162 hybridization