Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1380 ATGGGAAGAGCTCCTTGCTGTCAGAAGGTGGGGTTGAAGAGAGGTCCTTGGACTGCAGAAGAAGATCAGATTCTCATCAATCATGTCAACAAATATGGCCACAGTAATTGGCGTGCTCTCCCCAAATTAGCTGGGCTTCTCAGGTGTGGAAAAAGTTGCAGACTCCGATGGATCAATTATCTGAAGCCAGACATCAAACGAGGAAACTTCACCCAGGAAGAAGAGGAAACCATAATCAAGCTTCATGAAATGTTGGGAAACAGATGGTCGGCAATAGCAGCGAAGTTACCGGGCCGCACAGACAACGAAATAAAGAATGTATGGCACACACACTTGAAGAAGAGGCTTCCACAGAACCAACAGAACCATCCCCAAACAAAACGAAAACCAAAACAAAAGGAACAACACGCCGTCACCGACAACAGGCCACTATCTCCTTCGTATTCAAGTGATGTGTCCACCGTCACGACAACCACAAACAACGATAACAGTATTACCACTAGTAGTCCTGCTGCGATTAACGTCACCAACGACGACGACATGTCCATAAATATTGATGTTGAGGAGTCCCTGGCATTGGACGATGATTTCTGGTCGGAAGTCTTGTCGGCTGATAACTCCGAGGAGACTACTACCGATTATATTCCGGCGGCAGGCGGTGCGGTGGAGTCGGAGTTTCAGTTTCTGCTGTATCAACTAGACGATGCACAAGTAGAAGGAGACCATGTGAGTTCATTAAACATGGGCGATGGCATGGATTTTTGGTTTGATGTTTACAATAGAGCCGACGAATTCAAGGAGCTACCACAGCTATGA 816 0.4669 MGRAPCCQKVGLKRGPWTAEEDQILINHVNKYGHSNWRALPKLAGLLRCGKSCRLRWINYLKPDIKRGNFTQEEEETIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLPQNQQNHPQTKRKPKQKEQHAVTDNRPLSPSYSSDVSTVTTTTNNDNSITTSSPAAINVTNDDDMSINIDVEESLALDDDFWSEVLSADNSEETTTDYIPAAGGAVESEFQFLLYQLDDAQVEGDHVSSLNMGDGMDFWFDVYNRADEFKELPQL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1380 271 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 211 - -
Lele05g1380 271 FunFam Transcription factor MYB15 68 141 - -
Lele05g1380 271 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lele05g1380 271 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele05g1380 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele05g1380 271 SMART sant 13 63 IPR001005 -
Lele05g1380 271 SMART sant 66 114 IPR001005 -
Lele05g1380 271 MobiDBLite consensus disorder prediction 139 172 - -
Lele05g1380 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele05g1380 271 Gene3D - 69 142 - -
Lele05g1380 271 FunFam MYB-related transcription factor 13 66 - -
Lele05g1380 271 Gene3D - 11 67 - -
Lele05g1380 271 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele05g1380 271 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele05g1380 271 CDD SANT 16 61 IPR001005 -
Lele05g1380 271 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele05g1380 271 MobiDBLite consensus disorder prediction 114 172 - -
Lele05g1380 271 CDD SANT 69 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1380 Lele-ChrLele05 8691434 8692830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1380 1 271 MYB Transcription Factor Family AT2G31180 51.079 1.11e-88 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele05g1380 Myb_DNA-binding 3.3e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1380 05 8691434 8692830 Lele07g1445 07 8755300 8756685 hybridization
Lele05g1380 05 8691434 8692830 Lele08g1235 08 7828809 7831080 hybridization