Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1371 ATGCATATTGCTGCAGGTAAAACAGATACAGCTTCAGTGAAATGTCTTGTCAACAACATTTCCCGATTCATTCATCTGGTTTCTTGCCAAACAATGAAACCTACGCCATTTCAGAAGAACTATAATCATATGATTGGTGTGTTAAAGCGTTTGAAACCAGTGCTTGATGATGTTATAGATTGCAAAACTTACTTGGATGAACATTTATGTAAAGAGTGTGAAGAATTGGATGTGGCAGTTAATGAAGCTCAAGAGTTCTTGGAAAATTGGAGCCCAAAGAGAAGCAAGATTCTAAGTGTTCTGCGAAGTGGGTCATTGTTGATGAAAATACAGATATCCTCAGTTGAAATTTGTCACTTGATATTTAGATCCCTACAGTCGCCTCCACCTACTTCAGTTTTGGCTAGTCTTGAGAACTATTTGGAGGAACTTAAATGTTTGAAGAAGGAACCAGCCACAGGCTATATAGAAGAGGCATTGACAAATCAAAGAGACAATATCGAACCTCACAATGAAAATCTAAAGAAAATCATTGAGTTACTTGGATTGACAGCAAACCTGGAACTCATGAAAGAAAGCATTGCTGTGGAAAAGGAAAGATTGAGTACTGAAGTCAAGAAAATGAAAGCGGAATTAGATGAAATTAGTGCAGTTGTGGGTCTTGTCTGCAGTTTACGTGATCATGCGATTAAATTTAAGCTCCCTGAAGTCAAAAGTGGCATCTCAATTCCTTCGTACTTTATCTGTCCTTTATCACTGGAACTCATGATGAATCCTGTTATTGTGGCTTCAGGTCAGACATATGATAGGACGTCCATCCAAAAATGGCTTGATGATGGGTTGACTGTTTGTCCCAAGACTCATCAGAGACTTGCTCATACGAACCTCATCCCTAATTATACTGTAAAGGCTATGGTAGCAAATTGGTGTGAGGAAAATAATGTCAAGCTTCCCAGTAACTCTGAGTCCAATAATATGAAAACCCCCTTGGATTATCTATTGCCCCAAGATTTAGCTCGTTCATGTAGTCTTGGCTCTGTACATAGTAGCAATTCCACATCAAGATCATCTCTTCAAACTGGAAAGGCACTTGAGAAGCAAAAAGGTGATATCTCTTCCAGATTAAGTGGAGAATCCAATGGATGCCAGAGCATAGAAATAGAAAAATTTGAGCAACAATCTCCTGCTCCTTCCTATGTTTATAGTAGAAGTGAATCATTCTCAAGCTCCATTTCTAGTACTGACTGTGCACATCCTGTTTCAAAAGAAGCATCAGAGATATTTAATAAGCAAGAAAATGTAAAGGAGCTGTCTGGAGAAATCACCAAGGGACCTGCTGCTCCTGCAAATAATGAATCGGGGTCTACTCATTGGTTATCAGGAAAGCAATTGCAAGGCCCAAGATCAAAATTAGGAGAAACAGAGAATGGAAATAATAATAACGGCCAGTCAAAAGTGCATTCTCTTCCTGTTTGCAATTCAGGATATGATGAGTTGACAACTACATCTTATGTCAATAAGTTGATTGAAGATCTTCACAGTCAATCTGATGAAGTGCAAACTAAGGCTGCAGAAGAATTGAGGCTTCTTTCAAAGCACAATGTGGAAAACCGAATCATGATAGGGAAGTGTGGGGCTATCACACCTTTACTTTCACTACTGTATTCAGAAGTGAAGATAACACAAGAGCATGCTGTGACAGCTTTGCTGAATTTGTCCATTAGTGAAGATAACAAGGCATTGATTGCGGAAGCTGGAGCGATTGAACGACTCATCCATGTTCTGAAAACAGGAAATGATGGAGCCAAGGAGAATTCTGCAGCAGCTCTATTTAGCCTTTCTGTAATAGAACACTATAAGGCAGCAATTGGCCAGTCTGGAGCAGTCAAGGCTTTGGTTGATCTCCTTGGCTCGGGAACTCTTAGAGGAAAGAAGGATGCTGCTACTGCCTTATTTAACCTATCCATATGTCATGAGAATAAAGCTCGTATTGTTCAAGCTGGAGCTGTGAAGCATCTAGTTCAGTTATTGAACCCTGCTGCCGGAATGGTTGACAAGGCTGTTGCTCTTCTGGCAAACCTGTCAACATTTGCAGAGGGGCGATTAGCAATTGCAAGGGAGGGGGCCATCCCCTTACTAGTTGAGTTTGTTGATTCCGGTTCCCAAAGGGGAAAGGAAAATGCTGCTGCCATTCTCTTGCAACTATGCCTTCATAATACAAAGTTTTGTACTCTGGTTCTGCAAGAAGGAGCAGTACCTCCCTTGGTTGCATTATCTCAATCCGGTACACCAAGAGCAAAGGAAAAGGCACAACAACTTCTAAGCCATTTTCGTTATCAACGGGAAGGAGCTATTGGGAAGGGAAAAGCTTGA 2373 0.4067 MHIAAGKTDTASVKCLVNNISRFIHLVSCQTMKPTPFQKNYNHMIGVLKRLKPVLDDVIDCKTYLDEHLCKECEELDVAVNEAQEFLENWSPKRSKILSVLRSGSLLMKIQISSVEICHLIFRSLQSPPPTSVLASLENYLEELKCLKKEPATGYIEEALTNQRDNIEPHNENLKKIIELLGLTANLELMKESIAVEKERLSTEVKKMKAELDEISAVVGLVCSLRDHAIKFKLPEVKSGISIPSYFICPLSLELMMNPVIVASGQTYDRTSIQKWLDDGLTVCPKTHQRLAHTNLIPNYTVKAMVANWCEENNVKLPSNSESNNMKTPLDYLLPQDLARSCSLGSVHSSNSTSRSSLQTGKALEKQKGDISSRLSGESNGCQSIEIEKFEQQSPAPSYVYSRSESFSSSISSTDCAHPVSKEASEIFNKQENVKELSGEITKGPAAPANNESGSTHWLSGKQLQGPRSKLGETENGNNNNGQSKVHSLPVCNSGYDELTTTSYVNKLIEDLHSQSDEVQTKAAEELRLLSKHNVENRIMIGKCGAITPLLSLLYSEVKITQEHAVTALLNLSISEDNKALIAEAGAIERLIHVLKTGNDGAKENSAAALFSLSVIEHYKAAIGQSGAVKALVDLLGSGTLRGKKDAATALFNLSICHENKARIVQAGAVKHLVQLLNPAAGMVDKAVALLANLSTFAEGRLAIAREGAIPLLVEFVDSGSQRGKENAAAILLQLCLHNTKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRYQREGAIGKGKA 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1371 790 MobiDBLite consensus disorder prediction 345 378 - -
Lele05g1371 790 ProSiteProfiles U-box domain profile. 242 316 IPR003613 GO:0004842|GO:0016567
Lele05g1371 790 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 317 IPR013083 -
Lele05g1371 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 627 669 IPR000225 GO:0005515
Lele05g1371 790 MobiDBLite consensus disorder prediction 345 363 - -
Lele05g1371 790 MobiDBLite consensus disorder prediction 435 489 - -
Lele05g1371 790 FunFam RING-type E3 ubiquitin transferase 488 783 - -
Lele05g1371 790 CDD RING-Ubox_PUB 247 289 IPR045210 -
Lele05g1371 790 PANTHER U BOX DOMAIN-CONTAINING 36 777 - -
Lele05g1371 790 SUPERFAMILY ARM repeat 496 777 IPR016024 -
Lele05g1371 790 Pfam U-box domain 243 314 IPR003613 GO:0004842|GO:0016567
Lele05g1371 790 SUPERFAMILY RING/U-box 241 317 - -
Lele05g1371 790 SMART Ubox_2 246 309 IPR003613 GO:0004842|GO:0016567
Lele05g1371 790 Gene3D - 491 784 IPR011989 -
Lele05g1371 790 MobiDBLite consensus disorder prediction 448 489 - -
Lele05g1371 790 SMART arm_5 534 574 IPR000225 GO:0005515
Lele05g1371 790 SMART arm_5 739 779 IPR000225 GO:0005515
Lele05g1371 790 SMART arm_5 616 656 IPR000225 GO:0005515
Lele05g1371 790 SMART arm_5 657 696 IPR000225 GO:0005515
Lele05g1371 790 SMART arm_5 575 615 IPR000225 GO:0005515
Lele05g1371 790 SMART arm_5 697 737 IPR000225 GO:0005515
Lele05g1371 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 545 587 IPR000225 GO:0005515
Lele05g1371 790 Coils Coil 191 218 - -
Lele05g1371 790 Pfam Armadillo/beta-catenin-like repeat 618 655 IPR000225 GO:0005515
Lele05g1371 790 Pfam Armadillo/beta-catenin-like repeat 575 614 IPR000225 GO:0005515
Lele05g1371 790 Pfam Armadillo/beta-catenin-like repeat 534 573 IPR000225 GO:0005515
Lele05g1371 790 Pfam Armadillo/beta-catenin-like repeat 658 695 IPR000225 GO:0005515
Lele05g1371 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 668 709 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1371 Lele-ChrLele05 8637289 8641423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1371 9 790 U-box Gene Family AT3G54790 53.165 0.0 725