Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1368 ATGCATGTTTTGTGGAATAACAAAACTAAATCTGATTTCTTAATAACTTTGTCAACTTCCGACATGGAAAATTCATGTAAGGCGGCAGAGGAAAAAGGAAAACAAGAGGCTTTGATTCCCACGGTCAACCTGAGCTTCGAAATATACTTCCTCACCCCCGGTCTTGCTGCGGAGCTTCGAAACAACACTGTGACCCCATTCTCTCATCCAGCTCCTTTGCTGAGGGAGATAATCTCCAGTTCCGTCGAGTTTCCGAGTTCGACTGTCGCCTTAAGGATTCTGCTAAAGCTCCATAACTCAAGAAATCGACGAAACCGATGTTTAGTTGAGGATGCAGAAGCTTGTGGAGTCTTAGAAGTAATTATGGAATCAAAAAATGGAAGAAAATCTGCGCAATCCAAAAATAAAGAAATCCCTTCAGTTCCCCCTGGTTTTATATCCCTTACTTCTTTCATACTGAAAGAGGTTGCAAAGACTGATATATCTGAATGTGATCCAATTTGCATGGAGAGTTTATTGAAGCTAAATGACACTTCTGTATATAACGCAATTCTTAAGCATCGTCTCCGGATACTTTTTCACCAAAGTGACCATAACCTTGAGAAATCCGACACAGAGCATTTTCCTCCGGGTTTGTTTTCAAATGCTTGTCATCCAGAAGGGGTGACTCTTGGTTGTCCAGACTGTAGTGATTGTCTGAAGAATCAGCGGATTGATGGACTTCAAGTTCAGTGCCAGCAAGAAGTTGTGGACGACTCTTCCAAAAATGCAGAGACCAAGACCAGAAGAGGTCTAAGAGTAGCTTTGGACTCTCAACCTGGTAATGAAAACCCCCATGATGTTGAAGATTCTGAGTCTAAACCTGGCCCTACCTTCATTCTCAGTACATTTAAGAAATTTGCTGATGATTTCAAGGCCAAGTATTTCAACTGTGACAATAATGTTGTTGGGGGTTCTGATGAAAAGTGGGAGCCATCTGTGGAAAATATTGAGGGTGAGTATGGACGAATTACTCAAAGTCCAACTCACAAAATTGAGGTGTTTTTCAGTAACAACTTGGGGGCTGGAGTTTTAAGCGGTGGATTTCCAATGGTGTCTGATCCTCTGGAGTCACTCAAATATCCTGAATGTATGAGATCTGGATGGAACTTAAATAACATGCTTACACAATCTGGTTATCTTCTTTCATTTGAAAGCTCTGAGGTTTCTAGCAACTTTGCCCCTCTGGTTCATGTTGGAATGTGTTTTTCTTCATTCAATTGGAAAGTAGAAGAGCACCAGTTGTACAAATTGTGTTACATGCATGTGGGTGAGCCTAGAGTTTGGTATAGCATTCCCGGAAGATTTGCTGCTGACTTTGAAAGAGTGAGGAAGAAGCATGTCCCTGTTTTATCTGCAGAACAGTCTGACTTGTGTGACAATCTGAGACAAAGTCACAGTTCCACCGTATTGAAGTCTGAGGGTATACCGGTATATCGCTGTGTTCAGTATCCCAGGGAGTTTGTTCTCGTCTTCCCAGGAGCATACCATTCTGGACTTGATTGTGGTTTCAATTGTTCTGAATCATTCAGTTTTGCTCCTCTTGATTGGCTTCTTCATGGACAGAAAGTTGTAGATTACGGAGAAAGAGTGAAAGATCAAAGGGAATTTCTTTGCGCTTCTCTGAAATCACAGAGAATAGAAAAAGATCTCGATATCCCCTGCAAAAGAGAATGTTGCATATGTCTGCGTGACTTACACTTATCTGCCATAGGTTGTCCATGCTCAACCGACAAATTTGCATGTCTTAATCATGCAAAGCAGCTCTGTCGTTGCCCTTGGAGTGACAGATTTATCCTCTGCCGATATGAAATCAGTGAGTTGGATACCCTTTCCCTTGCTTTGGAGGGAAAAGCAAGTGTTATCCACAAATGGGCCAAATCCGATCTTAGATTAACTGTGACCTCCGTTGCCTCCAAAAGAAATGTGAGTAACCCATCGCTACTCCCTTGGCAAGAGAAGCATTTTTTGAATTCACTGAAACGGAAAAGGTATGTAGTAGAGTCCGAAGATATGAGCACTGATGGTGTCTTTTCCAGCATCGAGGCAAAACTGAAGGCACCTTTATCTGAAGCAACATGTGTTGGTAAATCGAAGGCGAAACAGATGGAAAGAGAAGCATTTTTGAATTCACTGAAACGGAAAAGAGATGCAGTTGAGTCCGAAGAGATGAGCATGATCACTGATGCTATCTCTTCCAGCAATGAGGCAAAATCGAAGGCACCTATACCTGAATCAACATGTGCAGGCAAATGGAAGGCAAAACAGAAAACGGTAGGCCTCCAATCTACAGCAACACACATTAAGAGTGGGGTCAATTCTGCTGTCGCCACTAAACCTGATCCCAAGTCACGGAATGTTCAGTCATCAATTCCAGATTTGGCTAAAAATTACCCAAAAAAGGGTAGGGATTTTCTAGGTCAAACTTCAGGTTATATGGCACTGCTGCCTGAACTCAGGTCATTAGATGTTTCTTCAGGTAGTTCATCTTCGTCATCAGAATCCGATGATGACGCTCAAACTGATGGTAAGAAAAAAATAATGGAGCGGTACTGA 2595 0.4212 MHVLWNNKTKSDFLITLSTSDMENSCKAAEEKGKQEALIPTVNLSFEIYFLTPGLAAELRNNTVTPFSHPAPLLREIISSSVEFPSSTVALRILLKLHNSRNRRNRCLVEDAEACGVLEVIMESKNGRKSAQSKNKEIPSVPPGFISLTSFILKEVAKTDISECDPICMESLLKLNDTSVYNAILKHRLRILFHQSDHNLEKSDTEHFPPGLFSNACHPEGVTLGCPDCSDCLKNQRIDGLQVQCQQEVVDDSSKNAETKTRRGLRVALDSQPGNENPHDVEDSESKPGPTFILSTFKKFADDFKAKYFNCDNNVVGGSDEKWEPSVENIEGEYGRITQSPTHKIEVFFSNNLGAGVLSGGFPMVSDPLESLKYPECMRSGWNLNNMLTQSGYLLSFESSEVSSNFAPLVHVGMCFSSFNWKVEEHQLYKLCYMHVGEPRVWYSIPGRFAADFERVRKKHVPVLSAEQSDLCDNLRQSHSSTVLKSEGIPVYRCVQYPREFVLVFPGAYHSGLDCGFNCSESFSFAPLDWLLHGQKVVDYGERVKDQREFLCASLKSQRIEKDLDIPCKRECCICLRDLHLSAIGCPCSTDKFACLNHAKQLCRCPWSDRFILCRYEISELDTLSLALEGKASVIHKWAKSDLRLTVTSVASKRNVSNPSLLPWQEKHFLNSLKRKRYVVESEDMSTDGVFSSIEAKLKAPLSEATCVGKSKAKQMEREAFLNSLKRKRDAVESEEMSMITDAISSSNEAKSKAPIPESTCAGKWKAKQKTVGLQSTATHIKSGVNSAVATKPDPKSRNVQSSIPDLAKNYPKKGRDFLGQTSGYMALLPELRSLDVSSGSSSSSSESDDDAQTDGKKKIMERY 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1368 864 Pfam C5HC2 zinc finger 572 624 IPR004198 -
Lele05g1368 864 Gene3D Cupin 236 546 - -
Lele05g1368 864 MobiDBLite consensus disorder prediction 249 288 - -
Lele05g1368 864 Pfam JmjC domain, hydroxylase 410 525 IPR003347 -
Lele05g1368 864 ProSiteProfiles JmjC domain profile. 376 542 IPR003347 -
Lele05g1368 864 SMART cupin_9 379 542 IPR003347 -
Lele05g1368 864 MobiDBLite consensus disorder prediction 835 849 - -
Lele05g1368 864 MobiDBLite consensus disorder prediction 850 864 - -
Lele05g1368 864 SUPERFAMILY Clavaminate synthase-like 370 540 - -
Lele05g1368 864 MobiDBLite consensus disorder prediction 784 806 - -
Lele05g1368 864 PANTHER LYSINE-SPECIFIC DEMETHYLASE 247 825 - -
Lele05g1368 864 MobiDBLite consensus disorder prediction 784 816 - -
Lele05g1368 864 MobiDBLite consensus disorder prediction 835 864 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1368 Lele-ChrLele05 8600989 8610001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1368 289 638 JUMONJI Transcription Factor Family AT2G34880 39.756 5.12e-86 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele05g1368 JmjC 4.2e-31 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1368 05 8600989 8610001 Lele05g1368 05 8600989 8610001 ECH
Lele05g1368 05 8600989 8610001 Lele06g1229 06 7778793 7785869 ECH
Lele05g1368 05 8600989 8610001 Lele07g1430 07 8670906 8676588 hybridization
Lele05g1368 05 8600989 8610001 Lele08g1225 08 7740044 7747156 hybridization