Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1349 ATGAAAAGTAGAACCAGAGAAAGAAGGAGGCGCGATATCAGCAGGAGTTTGCGTAGGATAATGAAGTGCCTATGTTCAGGGGAGCAGTTAAGAGGAGCAGACGAAATGGTTCCTTCATCTGAATCTCATGCATCCAAGGATTATTCAGTGAGTGGGGATTCTTGCACAGCTGGAGAAGTTGACAAGAAGAAGCCAGACACTGGTAATATAGAAGAAGCTGAATCATCCCTTCGGGAGAGTGGTTACTTGAACTACGAGGAAGCTAGAGCTCTGTTAGGAAGATATGAATTTCAGAAAGGCAACATTGAAGCCGCTTTACATGTTTTTGAAGGAATAGATATAGGCGACGTGACTCCTAAAATTAAAATTTCCCTTGCCCAAAGGACAGAACAAACTAAGAGACATAAGAGAGATGCCCAGCATAATGCTGCAACCCCCATGTCAATACATGCTGTTGGACTACTGTTGGAAGCGGTACTCCTGAAAGCAAAATCGTTGCAGGCTCTTGGAAGATTTAAAGAAGCTGCCCAATCTTGCAAAGTTATTCTGGACATAGTTGAATCTTCATTACCTGATGGTTTGCCTGAAAACTTTGGTGCTGAATGTAAATTGCAGGAGACTCTGAGCAATGCGGTTGAGTTGCTTCCAGAACTATGGAAACTTGCTGATTGTCCACGTGAAGTCATTGTGTCTTATAGGAGGGCACTCCTTCATGGATGGAATCTTGATGCGGATTCAACAGCAAAGATTCAGAAGGAGTTTGACCCTAATCTTGCAGAAGAAGGGGTAAGCTTTGCTTCGAGAGTGCTTGAGAGCTTGGGTGATAGATGTGATAAGTTAGAAAGTGTTGCCAATTGCTTACTTGGCGTTTCACATTCAGCAAATTCGAAATTAGTCATTTCTGATTCTGAGAGGTTTGAAAGGCAATCTGAGGCACTTCGTGCTCTGGAAACTGCTGGCAAAATGACTCGAATGAGAGACCACAATGTATTATCCTATCTAAGTTTAGAATATGCGGAACAGAGGAAGTTGGATGCTGCACTTTATTGTGCAAAATGCCTTCTAAAGCTGGAAGCGGGGTCTAATGTCAAAGGGTGGCTGTTGTTAGCTCGAATATTATCAGCCCAAAAACGGTTTTCAGATGCTGAATCTATTATCAACGCTGCTTTGGATCAGACTGGAAAATGGGAACAAGGGGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCCAGTTAAGGAGTGCCATTGAGACATATATTCAACTTCTTGCTGTTTTTCAAGTTCAAAAGAAAACATTTGGTTCTGGGAAGAACCTATATATGGAGAACAGAGATCATGCTAGGAACCTGGAAGTCGAAGTATGGCATGATCTTGCCTATGTATATATAAGCCTGTCACAGTGGCATGATGCTGAGATGTGTCTTTCTAAGTCTAAGGCCATCAAACTTTACTCTGCTTCTAGATGTCATACAACAGGACTGCTGTATGAAGCAAAGGGTCTTTACAAAGAGGCTTTAAAGGCTTTTAACGATGCTTTGAACATTGATCCCAATTATGCCCCAAGCTTGATTTCCAGTGCCATGGTTCTGAGATGGTGCAGTAGTAGTAAGGAATCAAATGCTGCAGTGAGAAGCTTTCTGATGGATGCACTGCGCCATGATAGATTGAATGTCGGTGCATGGTATAATCTTGGCCTTGTTCACAGGGATGAGGGCACAGTCTCGTCATTAATGGAAGCTGCGGAATGTTTCAAGGCCGCTCATTTTCTTGAAGAAACTTCGCCTGTTGAATCTTTCAGATGA 1812 0.426 MKSRTRERRRRDISRSLRRIMKCLCSGEQLRGADEMVPSSESHASKDYSVSGDSCTAGEVDKKKPDTGNIEEAESSLRESGYLNYEEARALLGRYEFQKGNIEAALHVFEGIDIGDVTPKIKISLAQRTEQTKRHKRDAQHNAATPMSIHAVGLLLEAVLLKAKSLQALGRFKEAAQSCKVILDIVESSLPDGLPENFGAECKLQETLSNAVELLPELWKLADCPREVIVSYRRALLHGWNLDADSTAKIQKEFDPNLAEEGVSFASRVLESLGDRCDKLESVANCLLGVSHSANSKLVISDSERFERQSEALRALETAGKMTRMRDHNVLSYLSLEYAEQRKLDAALYCAKCLLKLEAGSNVKGWLLLARILSAQKRFSDAESIINAALDQTGKWEQGDLLRTKAKLQIAQGQLRSAIETYIQLLAVFQVQKKTFGSGKNLYMENRDHARNLEVEVWHDLAYVYISLSQWHDAEMCLSKSKAIKLYSASRCHTTGLLYEAKGLYKEALKAFNDALNIDPNYAPSLISSAMVLRWCSSSKESNAAVRSFLMDALRHDRLNVGAWYNLGLVHRDEGTVSSLMEAAECFKAAHFLEETSPVESFR 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1349 603 Pfam Tetratricopeptide repeat 492 522 IPR019734 GO:0005515
Lele05g1349 603 SMART tpr_5 328 361 IPR019734 GO:0005515
Lele05g1349 603 SMART tpr_5 363 396 IPR019734 GO:0005515
Lele05g1349 603 SMART tpr_5 489 522 IPR019734 GO:0005515
Lele05g1349 603 SMART tpr_5 156 189 IPR019734 GO:0005515
Lele05g1349 603 SMART tpr_5 561 597 IPR019734 GO:0005515
Lele05g1349 603 SMART tpr_5 399 432 IPR019734 GO:0005515
Lele05g1349 603 SMART tpr_5 455 488 IPR019734 GO:0005515
Lele05g1349 603 MobiDBLite consensus disorder prediction 57 73 - -
Lele05g1349 603 ProSiteProfiles TPR repeat profile. 489 522 IPR019734 GO:0005515
Lele05g1349 603 SUPERFAMILY TPR-like 400 575 IPR011990 GO:0005515
Lele05g1349 603 Pfam Tetratricopeptide repeat 336 392 - -
Lele05g1349 603 Gene3D Tetratricopeptide repeat domain 62 436 IPR011990 GO:0005515
Lele05g1349 603 Gene3D Tetratricopeptide repeat domain 441 599 IPR011990 GO:0005515
Lele05g1349 603 MobiDBLite consensus disorder prediction 32 75 - -
Lele05g1349 603 PANTHER PROTEIN NPG1 255 603 IPR043376 -
Lele05g1349 603 SUPERFAMILY TPR-like 157 425 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1349 Lele-ChrLele05 8470778 8475811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1349 258 603 Calmodulin-binding Proteins AT4G28600 51.977 1.02e-104 331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2368 13 29372247 29372995 Lele05g1349 05 8470778 8475811 CCT
Lele14g2297 14 27700061 27710881 Lele05g1349 05 8470778 8475811 CCT
Lele15g0052 15 314036 318275 Lele05g1349 05 8470778 8475811 CCT
Lele16g0054 16 349118 355066 Lele05g1349 05 8470778 8475811 CCT
Lele05g1349 05 8470778 8475811 Lele05g1349 05 8470778 8475811 ECH
Lele05g1349 05 8470778 8475811 Lele07g1407 07 8545899 8550525 hybridization
Lele05g1349 05 8470778 8475811 Lele08g1205 08 7602111 7606901 hybridization