Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1346 ATGGAGGACTCTGGGAAGCATGGCAACAACAGTAAATTATTGAACCCATGGATGCTTCAGTTCCAGAAATTGGGTCTTGAACTCAAGTGCCCTCTCTGTTTAAACTTGTTCAGAAGGCCGATGCTACTTCCATGCAACCACATATTCTGCAGCTCCTGCATAGCTGATTGCATAAGGCCTAGTTCAGAATGTGCTGTTTGTAATATTCATTATACTCAAAGAGAACTGAGGTCTCTGCCTATTGTGGAAAACATGGTTGCAATTTATAAAAGCCTGGATGCTGCCTTTTATGCCAATTTTTCTCAGCATCGTTTTTCTGATGGGCTGCCATTTTTGAAGCGGTGTGAAACATTGGCAAATGTGAACTTTAATCATAAAATGTCCACGGAGCCATCCAAAACATCTCTAGCAGATCTACAAAGGAAGCAGTCAGTCTTTTCACATACAATGGTTGAACGTGCTAAGGTTCCTCTCAGTTTTGACCATTCTATGGAAATTGATATTGGCAAGAATCACAAATATGAGAAGAGTGGTAATGTGGTGCATGGTAAAGATAAGGAGTTTGATGTGTCTTGCAAGGAAGAGATTCTGATGAAATGTTCCCAACTAGATGGAAGGGCCCATGAAGATTGTGGGCTTGTGGAAATGGACATAAATCAAGTTACACAATCTTCACTGGGCAGCCCTCCATTTTGTGATACAAAGGGTTCAGACAATGACTGCAGTGACCAGGACAGTGAACATCGCATGCCTGCTGAGAGATTAGAAAGTTCTTCATCAAAGAGGGAAATCAAAGAAAATGAAATATTGGAAAAAAGGATCCAGTTGAGGTCTGAAAGCTCTGCCTCTGAAACAGAGGGTCTTGTGAGAGACTCCAAGAGGCCAAAAAATGTTTCTAATGACAATGATGACATTCAACCTAATGGAACCCGTCAAAGTAAGCCCATGATGTCTGAATGTAACATGGACCTTAAATCTGGGATTGAGGATTCAAATTCAAATACAAGCGTGTGTTCTTTTTGCCAGTCTTCTAGAACCTCAGAGGTTACTGGGCCGATGTTGCATTATAAAAATGGGAATTTGGTGACGGAAATTGCAGCACTCCAACCAAATGTCATACATGTGCATAGACTTTGCATTGAATGGTCACCTCAAGTGTATTTTGTTGATGAAACTGTTAAAAATTTGAAGGCAGAAGTGGCAAGGGGAGCAAAGCTAAAATGCAGCAAATGTGGTCAAAAGGGGGCTGCACTTGGATGCTATGTTAGATCCTGTAGGAGAACTTATCATGTTCCTTGTGCGATGGAAATCTCAGCTTGCCGTTGGGATGATGAGGAATTTCTTATGCTCTGTCCAGCTCATTCTCGTGTCAAATTTCCATGTGAGAAATCAAGTTCTAGGAAACAGGACTCCCAGAAGCATCCTGCGTCATGTCATTTGGCATCTAAGCTATCAAAATCCCCAATAGTTTTGTCAGATGATAGCAAACGTTTGGTTTTCTGTGGATCTGCTCTGTCTTCAAATGAAAAGATACATTTGATCAATCTTGCAAGTAGGATTGGTGCTACGGTTACCAAGTTTTGGACGCCAGATGTGACACATGTGATTGCAGCAACTGATTCAAACGGAGCATGCGCCAGGACACTTAAAGTTCTTATGGGCATTCTAAATGGGCAATGGATTCTTAAAATGGACTGGGTAACTACAAGCATGGAGGCGATGCGTCCTGTGGAAGAAGAGCCATATGAAATAAGTCTTGATAACTTTGGCTGTCAAGGTGGCCCAAAAGCTGGCAGACTTAGGGCATTGGCCAATGTGCCCAAGCTATTTAGCGGCTTTAGTATGTACTTTTCTGGTGATTACATGTCAGACTATAAGGAGGATCTTGTAGAGTTGGTTGTAGCAGGAGGAGGTTCTGTTTTGGAAAGCAAGGAAGAATTGCAAACAGAAGGCCATGAATGCAAGGAGACCTCAAAGCTGATTGTTTACAATCTTGATCCCCCACAAGGAAGTAGGTTGGGGGATGAAGTTACAATTCTTTGGGAGAGATTAAACGAGGCAGAGGATTTAGCTGCTACCACTGGTTCACAAGTCGTTGGTCACACATGGATTTTGGAGTCAATTGCTGCATGCAAGTTACAGCCTTTTATTAGTTAG 2157 0.421 MEDSGKHGNNSKLLNPWMLQFQKLGLELKCPLCLNLFRRPMLLPCNHIFCSSCIADCIRPSSECAVCNIHYTQRELRSLPIVENMVAIYKSLDAAFYANFSQHRFSDGLPFLKRCETLANVNFNHKMSTEPSKTSLADLQRKQSVFSHTMVERAKVPLSFDHSMEIDIGKNHKYEKSGNVVHGKDKEFDVSCKEEILMKCSQLDGRAHEDCGLVEMDINQVTQSSLGSPPFCDTKGSDNDCSDQDSEHRMPAERLESSSSKREIKENEILEKRIQLRSESSASETEGLVRDSKRPKNVSNDNDDIQPNGTRQSKPMMSECNMDLKSGIEDSNSNTSVCSFCQSSRTSEVTGPMLHYKNGNLVTEIAALQPNVIHVHRLCIEWSPQVYFVDETVKNLKAEVARGAKLKCSKCGQKGAALGCYVRSCRRTYHVPCAMEISACRWDDEEFLMLCPAHSRVKFPCEKSSSRKQDSQKHPASCHLASKLSKSPIVLSDDSKRLVFCGSALSSNEKIHLINLASRIGATVTKFWTPDVTHVIAATDSNGACARTLKVLMGILNGQWILKMDWVTTSMEAMRPVEEEPYEISLDNFGCQGGPKAGRLRALANVPKLFSGFSMYFSGDYMSDYKEDLVELVVAGGGSVLESKEELQTEGHECKETSKLIVYNLDPPQGSRLGDEVTILWERLNEAEDLAATTGSQVVGHTWILESIAACKLQPFIS 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1346 718 MobiDBLite consensus disorder prediction 301 317 - -
Lele05g1346 718 Pfam PHD-like zinc-binding domain 376 455 - -
Lele05g1346 718 SMART PHD_3 407 455 IPR001965 -
Lele05g1346 718 CDD ePHD 373 454 - -
Lele05g1346 718 ProSiteProfiles BRCT domain profile. 605 718 IPR001357 -
Lele05g1346 718 CDD BRCT_Bard1_rpt1 498 577 - -
Lele05g1346 718 FunFam Breast cancer type 1 susceptibility protein homolog 495 601 - -
Lele05g1346 718 SMART BRCT_7 488 574 IPR001357 -
Lele05g1346 718 SMART BRCT_7 607 711 IPR001357 -
Lele05g1346 718 Pfam RING-type zinc-finger 30 60 IPR027370 -
Lele05g1346 718 Gene3D BRCT domain 494 600 IPR036420 -
Lele05g1346 718 MobiDBLite consensus disorder prediction 225 317 - -
Lele05g1346 718 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Lele05g1346 718 SUPERFAMILY BRCT domain 498 585 IPR036420 -
Lele05g1346 718 Gene3D BRCT domain 606 711 IPR036420 -
Lele05g1346 718 SUPERFAMILY RING/U-box 27 90 - -
Lele05g1346 718 FunFam Breast cancer associated RING 1 332 457 - -
Lele05g1346 718 SUPERFAMILY BRCT domain 609 716 IPR036420 -
Lele05g1346 718 ProSiteProfiles Extended PHD (ePHD) domain profile. 335 455 IPR034732 -
Lele05g1346 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 99 IPR013083 -
Lele05g1346 718 ProSiteProfiles Zinc finger RING-type profile. 30 68 IPR001841 -
Lele05g1346 718 Pfam BRCA1 C Terminus (BRCT) domain 511 570 IPR001357 -
Lele05g1346 718 MobiDBLite consensus disorder prediction 238 300 - -
Lele05g1346 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 457 IPR013083 -
Lele05g1346 718 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 242 715 IPR031099 GO:0006281|GO:0006974
Lele05g1346 718 SMART ring_2 30 67 IPR001841 -
Lele05g1346 718 SMART ring_2 408 454 IPR001841 -
Lele05g1346 718 ProSiteProfiles BRCT domain profile. 498 584 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1346 Lele-ChrLele05 8449265 8454568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1346 528 641 Core DNA Replication Machinery Family AT4G02110 31.092 8.83e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1346 05 8449265 8454568 Lele05g1346 05 8449265 8454568 ECH
Lele05g1346 05 8449265 8454568 Lele07g1403 07 8525250 8530034 hybridization
Lele05g1346 05 8449265 8454568 Lele08g1203 08 7583929 7588858 hybridization