Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1343 ATGAATTCGCGTCTTTCAGTGGCATTTTTTCGGAAAATAATGGCAGCACGCCCTGCTTTTTCCGTTGAAAGATCAAGTGCAAAGCAACTCAGTAGCATGGGAGTGTCTGGAGCACTGTCTTCATCCCTGCCTGTCCACCCAACACCCATAGAAGAGACATATTCCAAGCTACCTGATTTTCAGCAGGCTTTTGTGGGAAAAGAGCGCATGGAAAGACCTCTTCCTCATTCAAGTCATTTAAATTCCAGCGGAGCAGTTGGGCACAAGTTTTCATCATCCCCTGGATATTCTACCGATCTTCATCACTCATCCCTTTCCCCTCATGGAAAACACTCAAGAAATACCTATTTTATTTCACAGTCTTCAAGTAGCATGGTATCATTGCCATTGTCATATTCTTCAAGTACTGGACCGCTGGCTTCTACAACATCAAGTTGTTATTCCAAAGAAAGTAATGGGTCCTGGGCTACAGATTCCGTGCCAAAGATTCTTGATTTTCCTGTAAATACTTCCATTAAGGATAGTCAAGTAGAAAGTAGTGCCTGCAATATAATGGCACCTGACGAGTATGGTAAGAAAAATGATTGGCAAGAGTGGGCTGACCAACTGATCAATGAAGACAATGCATTGACTTCTAACTGGAATGACATTCTTGTTGACCCCAGCATTCATGATCTTGAACCAAAGGTGTCATGCCAGACTTCAAAATCATCTTCACAATTGCCAGGGCTGCAGTCCCAAGGTCACCAGCAACTTCCAGCTTCGTTGGGAGAAAAACAAGTTAGTGCTCCGCCCTCTTCCTCAGCAAATTCTGCTCCTGCCAAGACACGAATGCGTTGGACACCAGAGCTTCATGTGGCCTTTGTGGAGGCTGTCAACCAATTTGGTGGCAGTGAAAGAGCAACCCCTAAGGGTGTGCTGAAGCTTATGAAAGTTGAAGGCTTAACAATATATCACGTTAAAAGCCACTTGCAGAAATATAGGACAGCTAGATATAGACCAGACTCATCTGAAGGATCCTCGGAGAAAAAGTTAACTCCAATGGAAGAGATGTCAGCTCTAGACTTGAAAACTGGCATGGAGCTCACTGAAGCTCTGAGACTACAGATGGAGGTTCAGAAGCGCCTGCACGAACAACTAGAGATTCAAAGGAATTTACAGTTGCGGATTGAAGAACAAGGAAGGTACCTCCAAATGATGTTTGAGAAGCAATGCAAATCTAGCGTTGAACAGTTTAAGGCAGCACCATCTGCCATTGAGGATCTCTCTGGAGTGTCATCAGATGCTATTAGAGATTCTTCCGCCAAAACTGAAGTGGATGTCTCCCTAGTGGACCATTGCAAATCAGGAACTGAACAAGAGAATGGCAACGCCGTAGTTGAAGAAAGCTCACTGAAAGTTGTTGAGAAGCATAATGCTCCTGAAAGTCAAACTTCTGACAGTACTAAGCAACATACGAGTGAAGATGATGTTGATGCTCAACCATCAAAGCGTCAAAGGACAGACGAATAA 1512 0.4398 MNSRLSVAFFRKIMAARPAFSVERSSAKQLSSMGVSGALSSSLPVHPTPIEETYSKLPDFQQAFVGKERMERPLPHSSHLNSSGAVGHKFSSSPGYSTDLHHSSLSPHGKHSRNTYFISQSSSSMVSLPLSYSSSTGPLASTTSSCYSKESNGSWATDSVPKILDFPVNTSIKDSQVESSACNIMAPDEYGKKNDWQEWADQLINEDNALTSNWNDILVDPSIHDLEPKVSCQTSKSSSQLPGLQSQGHQQLPASLGEKQVSAPPSSSANSAPAKTRMRWTPELHVAFVEAVNQFGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKKLTPMEEMSALDLKTGMELTEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSSVEQFKAAPSAIEDLSGVSSDAIRDSSAKTEVDVSLVDHCKSGTEQENGNAVVEESSLKVVEKHNAPESQTSDSTKQHTSEDDVDAQPSKRQRTDE 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1343 503 Pfam MYB-CC type transfactor, LHEQLE motif 360 407 IPR025756 -
Lele05g1343 503 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 272 332 IPR017930 -
Lele05g1343 503 FunFam Myb family transcription factor 274 332 - -
Lele05g1343 503 MobiDBLite consensus disorder prediction 230 277 - -
Lele05g1343 503 SUPERFAMILY Homeodomain-like 273 329 IPR009057 -
Lele05g1343 503 MobiDBLite consensus disorder prediction 482 503 - -
Lele05g1343 503 MobiDBLite consensus disorder prediction 447 503 - -
Lele05g1343 503 MobiDBLite consensus disorder prediction 230 275 - -
Lele05g1343 503 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 275 329 IPR006447 GO:0003677
Lele05g1343 503 Coils Coil 363 383 - -
Lele05g1343 503 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 249 486 IPR044848 GO:0003700
Lele05g1343 503 Gene3D - 274 333 - -
Lele05g1343 503 Pfam Myb-like DNA-binding domain 277 328 IPR001005 -
Lele05g1343 503 MobiDBLite consensus disorder prediction 73 108 - -
Lele05g1343 503 MobiDBLite consensus disorder prediction 76 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1343 Lele-ChrLele05 8432276 8438837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1343 14 404 G2-like Transcription Factor Family AT4G28610 48.507 7.95e-101 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele05g1343 Myb_DNA-binding 1.6e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1343 05 8432276 8438837 Lele13g1895 13 26716916 26719753 CCT
Lele05g1343 05 8432276 8438837 Lele14g1833 14 25068165 25071046 CCT
Lele05g1343 05 8432276 8438837 Lele15g0513 15 2998325 3001155 CCT
Lele05g1343 05 8432276 8438837 Lele16g0533 16 2950334 2953194 CCT
Lele05g1343 05 8432276 8438837 Lele05g1343 05 8432276 8438837 ECH
Lele05g1343 05 8432276 8438837 Lele06g1205 06 7580779 7585524 ECH
Lele05g1343 05 8432276 8438837 Lele07g1400 07 8511307 8515549 hybridization