Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1341 ATGGCACCCAATCCAAGGGTCGCTGCAGCCTATCGTGCAATGACTGTTCTTGGCATTAAGGAAGTAAAAGTCAAACCGGTATTGAAGCAACTTCTTAAATTGTATGATAAGAACTGGGAACTTATTGAACAAGAGAACTATAGAGCTCTTGCAGATGCTATATTTGAGCAGGAGGAAAAAGAGGAAGGAGAAATGGAGGGTGAAGAGGCTCAGATGCGGGATGAACCAGTGCGACCTTTGAAGAGGTTGCGTTTAAGAGGCCAAGAGAATCAGGCTTCACATACTCTGAGTATTTGTGGAACCAGCTCAGCTGCCTCCCCATCTAAAATGCCTAAAGTAGAAGGTGATGAATTGCCTGAAAGTTGTCCCAGCCAGCAGACTCAATACAATGCAATGTCACCTCAATCCAATAGAAATGCAGAGACTGAAGTTCGCCCTGTTCCAGTGCGAGATAGTTTTGTTGACAAGGGAAAGCAACCTTTATCACCTCAAGCTGCTACTGGAGGAAGAAGACTTGGATCTAAAAGAGCATCTCCATCAGTGCCAATTAAAGAACCTGCAGCTGAACAGAGAATTGTGCCATTACCGAAAAACCAGTTGCCCTATACTCACGCATTGATCAAGCCTAAAGATGAGCCTATTGATGAACTGGTAGATTATAATGCTCCTATTGCAACAATTCATCCCGATTGTTGTCTTTTGAGGGATGGTGGTGGGTCACTGGAGTCCATTGTAGGCTTCCTTATGCACTTGCATGTGATTGAAATTTGAGAACCTCCAATGCAGCATGATGCAACTAGAAAACAAGATGCAACAAGAAAACAAGACAGGAATGGTCCTTTAATGTCTAAATGCAGAGATGAAGGTAGAGGGGAAGGTATTCGTGATTCATCAGATGAAGTAAACCATAAGGTTGCAACAAACCAAGAGTGTTCTACCATAGAGTTAGCCTCCTCAACATCAGGAGAGGTAAAAATTACTATGAGCTGCAGTTCTGCTCTTGGGAGATCAGATTTTTGTTTGCCTAGTCGAGATCAACTTTTAAAAATGATGGAGGATAAACGTCTGCAATCATATAATATCACTGACCCAAATTTTTCTATCATGACAATGTTGAGAGATATGTGTGACTGCGTGTTGGAATTCAGAACTGATTCAAATGATGACTCACAGGAAGGATCTGAAATGATGACATCAAGTCTAAATTTATTGAAGAAATCTAAGGCATGTGATTCTCTTATTATCAGAGGCAATACAGAAGATTTAGGAATTCGTGCTGGCACATCAAATGGATCAATCAACATTCAGTCTTCTGCACTGAATGCATCTCGCATTTCAACTTCTCCCCTGCTTTTGAGTATGAATGATGCTGTACTAGTAACCAACAAGGCCAGAAGTGGTTTTCCAGAGTGTGATGACGGAAAGGGGCTGGAGGATCCTATATCTCAACATTCAGGTAGTTTGGTTGTTGTTCAACAGCATCAGCTTACTCCTGGTGATCTATGGTCTCTTCATGGTGCTGACGACCTTTCAAAAGGAGAAGAAAATCACAGAATTCCGTGGGTGAATGATATAACGAATGACTTCCCTCCACCTTTTCACTATCTGCACCAAAGCATTGGTTTCAAAGATGCTTATGTTAACTGGTAAGGAAAAGGATGGGGTCTTCGTACCTTAGAGGAGCTTCCAAAAGGTGCATTTGTGTGTGAGTTTGTGGGAGAAATATTAACCGTCAAAGAGTTGCAAGAGAGGAACATGCAGTGTGCTCAAAATGGAACGTACACGTACCCAGTTCTGTTAGACGCAGATTGGGATTCAGGATTTATGAATGATAAAGAAGCTCTCTGCTTGGATGCAGCATCTTATGGGAATATTGCCAGGTTTATAAATCACAGATGTTTGGATGCAAACTTGATTGAGATCCCTGTTGAAGTTGAAACCTCGAATCATCGCTACTTTCATCTTGCTTTCTTCACATCCAGAAAAGTAGCTGCACTGGAAGAGCTAACTTGGGATTATGGTATTGACTTTGATGACAATGAGGGTCCTGTTAAGCCATTCTCTTGCAGATGTGGCAGCAATTGCAATCCTATGTTAAAAACTTGCCAACCTTTAAGGACTGCGTATGAGATGATTGATCCAATAGATCTGCGCCTATTGCATGATGCCCCTAAAATATATAGACGTCACACTCTTCCCACCGCGAATTGGAACGAGACCCAATCTAATGAATTGGAGCATAATTGGTGTAATGCTCCCTGGATTGAGTGGGAAAAGGATTTTGTAATAGCCATCCATTATTTCAGTGAAATTGCAGAGCTTCAGCGAAGAACAATGTCGAAGAGAGGTCGCGGGGGTTCGGCCGGCAACAAGTTCCGGATGTCACTGGGTCTGCCAGTGGCGGCGACAGTGAACTGCGCCGACAATACCGGAGCTAAGAACCTGTACATCATTTCAGTGAAGGGGATCAAGGGTCGCCTCAACCGTTTGCCTTCTGCCTGCGTGGGGGACATGGTCATGGCCACCGTGAAGAAAGGAAAGCCTGATCTCAGGAAGAAGGTCTTGCCTGCTGTCATCGTTCGACAGCGCAAGCCATGGCGCAGAAAGGATGGCGTCTATATGTACTTCGAAGATAATGCGGGTGTCATTGTTAATCCCAAGGGCGAAATGAAAGGTTCTGCTATTACTGGTCCGATTGGCAAGGAATGTGCTGATCTCTGGCCGAGGATTGCAAGTGCTGCTAATGCAATTGTTTGA 2757 0.4356 MAPNPRVAAAYRAMTVLGIKEVKVKPVLKQLLKLYDKNWELIEQENYRALADAIFEQEEKEEGEMEGEEAQMRDEPVRPLKRLRLRGQENQASHTLSICGTSSAASPSKMPKVEGDELPESCPSQQTQYNAMSPQSNRNAETEVRPVPVRDSFVDKGKQPLSPQAATGGRRLGSKRASPSVPIKEPAAEQRIVPLPKNQLPYTHALIKPKDEPIDELVDYNAPIATIHPDCCLLRDGGGSLESIVGFLMHLHVIEIXEPPMQHDATRKQDATRKQDRNGPLMSKCRDEGRGEGIRDSSDEVNHKVATNQECSTIELASSTSGEVKITMSCSSALGRSDFCLPSRDQLLKMMEDKRLQSYNITDPNFSIMTMLRDMCDCVLEFRTDSNDDSQEGSEMMTSSLNLLKKSKACDSLIIRGNTEDLGIRAGTSNGSINIQSSALNASRISTSPLLLSMNDAVLVTNKARSGFPECDDGKGLEDPISQHSGSLVVVQQHQLTPGDLWSLHGADDLSKGEENHRIPWVNDITNDFPPPFHYLHQSIGFKDAYVNWXGKGWGLRTLEELPKGAFVCEFVGEILTVKELQERNMQCAQNGTYTYPVLLDADWDSGFMNDKEALCLDAASYGNIARFINHRCLDANLIEIPVEVETSNHRYFHLAFFTSRKVAALEELTWDYGIDFDDNEGPVKPFSCRCGSNCNPMLKTCQPLRTAYEMIDPIDLRLLHDAPKIYRRHTLPTANWNETQSNELEHNWCNAPWIEWEKDFVIAIHYFSEIAELQRRTMSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1341 918 MobiDBLite consensus disorder prediction 89 108 - -
Lele05g1341 918 SUPERFAMILY SET domain 508 683 IPR046341 -
Lele05g1341 918 MobiDBLite consensus disorder prediction 88 190 - -
Lele05g1341 918 SMART set_7 543 680 IPR001214 GO:0005515
Lele05g1341 918 SUPERFAMILY Ribosomal protein L14 789 918 IPR036853 GO:0003735|GO:0005840|GO:0006412
Lele05g1341 918 MobiDBLite consensus disorder prediction 261 302 - -
Lele05g1341 918 FunFam 60S ribosomal protein L23 779 918 - -
Lele05g1341 918 Gene3D SET domain 546 699 IPR046341 -
Lele05g1341 918 Pfam SET domain 553 674 IPR001214 GO:0005515
Lele05g1341 918 Hamap 50S ribosomal protein L14 [rplN]. 797 918 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lele05g1341 918 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 551 694 - -
Lele05g1341 918 MobiDBLite consensus disorder prediction 120 142 - -
Lele05g1341 918 Gene3D Ribosomal protein L14 779 918 IPR036853 GO:0003735|GO:0005840|GO:0006412
Lele05g1341 918 Gene3D - 1 60 IPR043017 -
Lele05g1341 918 MobiDBLite consensus disorder prediction 260 302 - -
Lele05g1341 918 ProSitePatterns Ribosomal protein L14 signature. 857 883 IPR019972 -
Lele05g1341 918 ProSiteProfiles SET domain profile. 538 674 IPR001214 GO:0005515
Lele05g1341 918 SMART Ribosomal_L14_2 797 918 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lele05g1341 918 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 GO:0018024
Lele05g1341 918 Pfam Ribosomal protein L14p/L23e 800 918 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1341 Lele-ChrLele05 8417894 8425835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1341 779 918 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 97.857 1.57e-93 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele05g1341 SET 2.3e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1341 05 8417894 8425835 Lele14g1831 14 25060317 25061783 CCT
Lele05g1341 05 8417894 8425835 Lele15g0515 15 3008814 3011549 CCT
Lele05g1341 05 8417894 8425835 Lele16g0535 16 2964221 2965786 CCT
Lele05g1341 05 8417894 8425835 Lele05g1341 05 8417894 8425835 ECH
Lele05g1341 05 8417894 8425835 Lele07g1398 07 8501992 8503691 hybridization
Lele05g1341 05 8417894 8425835 Lele08g1200 08 7568999 7570684 hybridization