Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1330 ATGGAGGACGATGCTGATATATACGATGGTGTTAGAGCTCAATTCCCTCTTAGTTTTGGAAAGCAGTCCAAGTCTCAAACCCCTCTCGAAGCCGTCCACAATGCCACTCGTCGTTCCAGTTCCAATCTTAGCTCTAATCCCTCGGCCACGACGACCACCACCACCGACACCAAAAGTACCAATAGCCTCCCTTCTATCTCCTCTTCCAAGGCCTGGCTTCATTCCCTCCGCAACTCCACAAACCCTAACCCTGATTCGACCGCCGATCGTGGTGGTAGTGCTTCCATTATTGGGTCGTCTCGGCCACCTCTGCCAGTGGAATCTGACAAGGACGGCGGTGTTATGGTGGGACCACCTCGGCCACCTGAGGGAGAAGAGGATGATGGTGCGACGATTGGGCCTCCTCCACCACCTGTTGGTTTAGGTTCTGGTGAAGAAGGGCATGACGATGGGGAGATGATTGGCCCGCCAAAACCTCCTCCCGGTTCAAATTTGGGTGCCTCAAGTTCTGAGGACGATTCAGATAAAGACGAGGTGGGGAATCGGTTTCGAATTCCCCTTAGTAATGAGATCGTTCTCCAGGGCCACAATAAGGTTGTTTCGGCTCTTGCTGTGGATCACTCTGGGTCTAGAGTACTTTCCGGAAGTTATGACTATACAGTGCATATGTATGACTTTCAAGGAATGAGTTCGCGGTTGGAATCATTTCGACAATTGGAGCCATTTGAAGGTCATCAAGTTCGCAACCTAAGCTGGAGTCCAAGTGCAGATCGCTTTGTGTGTGTGACAGGGTCAGCTCAAGCAAAGATCTATGATCGAGATGGGCTTACTTTGGGAGAGTTTGTGAAAGGGGACATGTATATCCGTGATCTAAAAAATACCAAAGGCCACATATCTGGATTGACGTGGGGAGAATGGCACCCAAAAACCAAGGAAACAATTTTAACATCATCAGAGGATGGATCGCTGCGCATATGGGATGTAAACGACTTCAAAAGTCAGAAGCAGGTTATCAAACCAAAGCTTGCAAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATCGGGACGGTAAATGCATCGCAGGTGGTATTGGAGATGGTTCTATACAGATTTGGAGTATTAAGCCTGGATGGGGAAGCAGGCCAGATATATATACTGACAAAGGGCATTCTGATGATATTACTTGTCTGAAATTTTCTAGTGATGGGAGAGTTTTACTGTCAAGAAGCTTTGATGGTTCATTGAAGGTCTGGGATTTGCGCTTGCGCAAAATAAAAGAACCTCTAAAGGTATTTGAAGATCTTCCGAATAATTACGGGCAAACAAATATCACTTTTAGCCCCGATGAACGACTTTTTCTTACCGGAACATCTATTGAAAGAGAGAGTTCAAGTGGAGGTTTATTGTGCTTTTATGACCGCACAAACCTTGAGCTTGTTTCAAGAGTTGGTATATCGCCCACTTGTAGTGTTGTACAATGTGCTTGGCATCCTAAACTGAATCAGATCTTTGCAACGGTTGGTGACAAAAGCCAAGGAGGAACTCACGTACTATATGACCCAACCCTCAGTGAGAGAGGAGCTCTCGTTTGCGTTGCACGTGCGCCAAGGAAAAAATCAATTGATGATTTTGAGGCAAAACCGGTTGTTCACAATCCTCATGCCTTACCACTATTTAGAGATCAGCCAAGCCGTAAACGTCAGCGACAGAAAATACTGAAGGATCCAGTGAAATCCCATAAGCCTGAACTTCCCATAACAGGGCCTGGTTTTGGTGGCCGAGTTGGTGTAAGTCAAGGAAGCTTGCTGACTCAATATCTTCTGAAGCAAGGGGGTATGATTAAGGAGACGTGGATGGAAGAAGATCCGAGAGAAGCTATCCTGAAATATGCTGATGTTGCAGCAAATGATCCAAAATTCATTGCTCCAGCATATGCAAAAACCCAGCCTGAGCCTGTCTTCCAAACTTCAGATTCTGACGAGGAAGAGAAACAATAG 2004 0.4656 MEDDADIYDGVRAQFPLSFGKQSKSQTPLEAVHNATRRSSSNLSSNPSATTTTTTDTKSTNSLPSISSSKAWLHSLRNSTNPNPDSTADRGGSASIIGSSRPPLPVESDKDGGVMVGPPRPPEGEEDDGATIGPPPPPVGLGSGEEGHDDGEMIGPPKPPPGSNLGASSSEDDSDKDEVGNRFRIPLSNEIVLQGHNKVVSALAVDHSGSRVLSGSYDYTVHMYDFQGMSSRLESFRQLEPFEGHQVRNLSWSPSADRFVCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTWGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDRDGKCIAGGIGDGSIQIWSIKPGWGSRPDIYTDKGHSDDITCLKFSSDGRVLLSRSFDGSLKVWDLRLRKIKEPLKVFEDLPNNYGQTNITFSPDERLFLTGTSIERESSSGGLLCFYDRTNLELVSRVGISPTCSVVQCAWHPKLNQIFATVGDKSQGGTHVLYDPTLSERGALVCVARAPRKKSIDDFEAKPVVHNPHALPLFRDQPSRKRQRQKILKDPVKSHKPELPITGPGFGGRVGVSQGSLLTQYLLKQGGMIKETWMEEDPREAILKYADVAANDPKFIAPAYAKTQPEPVFQTSDSDEEEKQ 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1330 667 PRINTS G protein beta WD-40 repeat signature 408 422 IPR020472 -
Lele05g1330 667 PRINTS G protein beta WD-40 repeat signature 362 376 IPR020472 -
Lele05g1330 667 PRINTS G protein beta WD-40 repeat signature 314 328 IPR020472 -
Lele05g1330 667 MobiDBLite consensus disorder prediction 18 94 - -
Lele05g1330 667 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 9 666 - -
Lele05g1330 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 336 IPR001680 GO:0005515
Lele05g1330 667 ProSitePatterns Trp-Asp (WD) repeats signature. 314 328 IPR019775 -
Lele05g1330 667 SMART WD40_4 382 421 IPR001680 GO:0005515
Lele05g1330 667 SMART WD40_4 186 225 IPR001680 GO:0005515
Lele05g1330 667 SMART WD40_4 235 272 IPR001680 GO:0005515
Lele05g1330 667 SMART WD40_4 284 327 IPR001680 GO:0005515
Lele05g1330 667 SMART WD40_4 331 375 IPR001680 GO:0005515
Lele05g1330 667 FunFam Nucleotide binding protein 134 281 - -
Lele05g1330 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 389 423 - -
Lele05g1330 667 MobiDBLite consensus disorder prediction 1 180 - -
Lele05g1330 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 294 329 - -
Lele05g1330 667 SUPERFAMILY WD40 repeat-like 178 511 IPR036322 GO:0005515
Lele05g1330 667 Pfam WD domain, G-beta repeat 349 375 IPR001680 GO:0005515
Lele05g1330 667 Pfam WD domain, G-beta repeat 390 421 IPR001680 GO:0005515
Lele05g1330 667 Pfam WD domain, G-beta repeat 292 327 IPR001680 GO:0005515
Lele05g1330 667 Pfam WD domain, G-beta repeat 191 225 IPR001680 GO:0005515
Lele05g1330 667 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 193 227 - -
Lele05g1330 667 Gene3D - 29 281 IPR015943 GO:0005515
Lele05g1330 667 Gene3D - 282 526 IPR015943 GO:0005515
Lele05g1330 667 MobiDBLite consensus disorder prediction 646 667 - -
Lele05g1330 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 423 IPR001680 GO:0005515
Lele05g1330 667 FunFam WD repeat-containing protein 70 282 526 - -
Lele05g1330 667 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 234 IPR001680 GO:0005515
Lele05g1330 667 CDD WD40 192 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1330 Lele-ChrLele05 8338164 8341297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1330 314 490 Miscellaneous Gene Families AT5G08390 25.843 3.98e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1330 05 8338164 8341297 Lele05g1330 05 8338164 8341297 ECH
Lele05g1330 05 8338164 8341297 Lele07g1382 07 8403837 8407011 hybridization
Lele05g1330 05 8338164 8341297 Lele08g1184 08 7476756 7479982 hybridization