Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1312 ATGACTGGAGCTTGGAGCCTGGAGCCTGGAGCCTGGAGCCTGGAGAAAGAGGAATGGAGAAATGGGGTTTTTAACGAGAATAAGGGTGAGAAAGCCCGAAAGGAGAAGAGAGGCAGTATGAATCACCGTGTTCCAGATTTCGAAATTGAAATGGATGATGATGAATATCCGATACCCACGTCTTCTGGAGTGCACCGCCAAAAGAAGCCCTCCGTGCCCGAGGACGATATCATGGAGCTCTTGTGGCAGAACGGCCAGGTCGTTATGCAGAGCCAGAATCATCGGCCTCAGAGAAAACCGCCGCCAGAGAGACCGCCGACTGAAGATCGGAAACGGAAGGGCCGGGAGCCCGATGAATTGGAGTGCCACAGCGAGGATTTCTACGTTGAATCCGCTGAAGCCAAGAAACAAAATTGTGGATCATCATCTACTAAAAGATCACGTGCTGCCGAGGTTCATAATCTCTCAGAGAGGAGGCGTCGGGATAGGATTAATGAAAAGATGAGAGCCTTGCAAGAACTTATCCCTCGCTGCAATAAGTCTGACAAAGCTTCCATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGGATGATGCATCTACAGTCCGTGCAGAATCAGGCAATGAACATCCCAACTGCCAGCAAACCAAGTAGCAGTAAGAGCCATGAAAATGCAGAAAATAATCAACCAGGTCAACCAGGTTAG 744 0.4906 MTGAWSLEPGAWSLEKEEWRNGVFNENKGEKARKEKRGSMNHRVPDFEIEMDDDEYPIPTSSGVHRQKKPSVPEDDIMELLWQNGQVVMQSQNHRPQRKPPPERPPTEDRKRKGREPDELECHSEDFYVESAEAKKQNCGSSSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMMHLQSVQNQAMNIPTASKPSSSKSHENAENNQPGQPG 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1312 247 Gene3D - 143 206 IPR036638 GO:0046983
Lele05g1312 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 214 IPR036638 GO:0046983
Lele05g1312 247 Pfam Helix-loop-helix DNA-binding domain 152 198 IPR011598 GO:0046983
Lele05g1312 247 FunFam Basic helix-loop-helix transcription factor 143 206 - -
Lele05g1312 247 MobiDBLite consensus disorder prediction 25 49 - -
Lele05g1312 247 MobiDBLite consensus disorder prediction 135 149 - -
Lele05g1312 247 SMART finulus 154 203 IPR011598 GO:0046983
Lele05g1312 247 MobiDBLite consensus disorder prediction 97 132 - -
Lele05g1312 247 CDD bHLH_AtPIF_like 148 211 - -
Lele05g1312 247 MobiDBLite consensus disorder prediction 220 247 - -
Lele05g1312 247 PANTHER TRANSCRIPTION FACTOR PIF3 64 103 IPR044273 GO:0003700|GO:0006355
Lele05g1312 247 MobiDBLite consensus disorder prediction 25 156 - -
Lele05g1312 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1312 Lele-ChrLele05 8154272 8159368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1312 102 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 66.964 5.18e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele05g1312 HLH 4.9e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1312 05 8154272 8159368 Lele16g0559 16 3157120 3159600 CCT
Lele05g1312 05 8154272 8159368 Lele05g1312 05 8154272 8159368 ECH
Lele05g1312 05 8154272 8159368 Lele07g1360 07 8206315 8211412 hybridization
Lele05g1312 05 8154272 8159368 Lele08g1164 08 7287219 7291180 hybridization