Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1297 ATGGCGGCAGCGAGGCGGCTCCGGGACCTGCAAGCCCAATCGGGGAACAGGATCTGCGTTGATTGCTCTCAAAAGAACCCCCAGTGGGCTTCCGTTTCCTATGGAGTTTTCATGTGCTTAGAATGCTCCGGCAAGCACCGTGGCCTCGGTGTCCACATCTCCTTTGTCCGATCCGTTACGATGGATTCCTGGTCCGAAATCCAGATCAAGAAGATGGAAGCAGGTGGTAATGAGCAACTCAACGCCTTCCTCGCCCAGTATGGTATCGCCAAGGAGACTGATATTGTCACCAAATACAATACTAATGCCGCCAGCATTTATAGGGATCGAATTCAGGCCCTTGCCGAGGGACGACCGTGGCGGGATCCACCTGTTGTCAAGGAGAACCTTGGCCCTCGGAAGAGTAAGCCTCCGTTGCCGAAAAGCGGAAATGATGGAGGCTGGGATAGTTGGGATAACGATGACGGGGTCAGATCCCCCAATGACATCAAGCGCAACATGTCTACAGGGGATGTAAGGGGGTTCAATGGAGGTTCAACCGGTAGCATGCCCGCGAGGTCGAGGTCGACAGAGGATATCTACACGCGGTCGCAATTGGAGGCTTCCGCTGCCAACAAAGACAACTTTTTCGCTCGCAAGCAGGCAGAGAACGAATCACGACCCGAAGGGATTCCACCCTCGCAAGGAGGCAAGTACGTTGGATTCGGATCTAGTCCCGCACCTTCCCGGGTGAATAACCAACAAGGCGATGTCTTTTCAGTTATGTCTCAGGGATTTGGTAAATTGTCTTTGGCTGCTGCCTCTGCGGCCCAGTCTGCTGCTAATGTTGTTCAGGCTGGCACTAAAGAGATCGCTACCAAGGTAAAGGATGGTGGGATAACCCCAACTGGCCAAATGATAACTGGCAGAGAAATGAAAATGATAGAAATGGCTATTATCAAGAATATAATCAAGGGAATAAAGGTTGGAATTCTTCTACTGGAGTAG 987 0.5167 MAAARRLRDLQAQSGNRICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNEQLNAFLAQYGIAKETDIVTKYNTNAASIYRDRIQALAEGRPWRDPPVVKENLGPRKSKPPLPKSGNDGGWDSWDNDDGVRSPNDIKRNMSTGDVRGFNGGSTGSMPARSRSTEDIYTRSQLEASAANKDNFFARKQAENESRPEGIPPSQGGKYVGFGSSPAPSRVNNQQGDVFSVMSQGFGKLSLAAASAAQSAANVVQAGTKEIATKVKDGGITPTGQMITGREMKMIEMAIIKNIIKGIKVGILLLE 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1297 328 SUPERFAMILY ArfGap/RecO-like zinc finger 5 111 IPR037278 -
Lele05g1297 328 CDD ArfGap_ArfGap1 3 117 - -
Lele05g1297 328 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Lele05g1297 328 Gene3D Arf GTPase activating protein 1 125 IPR038508 -
Lele05g1297 328 Pfam Putative GTPase activating protein for Arf 5 94 IPR001164 GO:0005096
Lele05g1297 328 MobiDBLite consensus disorder prediction 162 190 - -
Lele05g1297 328 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Lele05g1297 328 MobiDBLite consensus disorder prediction 118 190 - -
Lele05g1297 328 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Lele05g1297 328 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 293 IPR044519 GO:0005096|GO:0016192
Lele05g1297 328 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Lele05g1297 328 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Lele05g1297 328 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1297 Lele-ChrLele05 8081847 8084417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1297 5 87 C2H2 Transcription Factor Family AT4G21160 51.190 5.84e-24 98.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1297 05 8081847 8084417 Lele05g1297 05 8081847 8084417 ECH
Lele05g1297 05 8081847 8084417 Lele07g1345 07 8131965 8134821 hybridization
Lele05g1297 05 8081847 8084417 Lele08g1153 08 7212649 7216152 hybridization