Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1296 ATGGTGGGTATCTTATCCTTAGTAACGGGTAGGCCTGGTCCCAGTGGCTTTGGATCTGCTTCCACTGCTGAACAGGTTACTGACGGAACCGATGCCACCCATCTCACTGCCATAGTTACAGGCGGAGCAAGTGGTATAGGGTTGGAAACTGCAAGAGTCTTGGCTCTTCGAAAGGCCCACGTCATCATTGGTGCGAGGAACATTGAGGCCGCAAAAGAAGCAAAACAGCTTATTCTGCAAGAAAATGAGTCCGCTAAAGTGGAGATTCTCAAGCTTGATCTCTGCTCAGTCAAATCTATCAGATCATTTGTTGACGATTTCATGGCTCTTGATCTTCCTCTCAACATCTTAATAAACAATGCTGGTGTCATGTTCTGCCCATTCCAACTCTCTGAGGATGGGATCGAGATGCAATTTGCTACTAATCATCTTGGTCATTTCCTATTGACAAACCTTCTTCTTGACAAGATGAAGCAAACTGCAAAAGCAAGCGGAATCGAGGGCAGGATCGTCAATTTGTCATCAATTGCCCATACCTACACTTATGAAGAGGGTATCCGCTTTGATCAGATCAATGATCAAATTGGATACTCTGACAAGAAAGCATATGGGCAGTCCAAGTTGGCCAATATATTGCACGCAAATGAGCTTTGTCGTCGCCTGCAGGAAGAGGATGTGAACATTACAGCCAACTCAGTCCACCCAGGAGTTATAATGACTCCTCTTATGAGACATTCTTCCTTCCTCATGCATTTTCTCAAGTTGTTCACCTTTTTCATATGGAAAACTGTTCCACAGGGCGCAGCCACTACATGTTACGTTGCTCTGCACCCAAGTGTGAAAGGTGTTAGTGGGAAATACTTTCTGGACTGCAATGAATTTGAACCAAGTGGTCTCGCTAAAGACGACCTCTTAGGGAGGAAACTCTGGGATTTTAGCAACAAGTTGATCAAGTCTATTTCAAGAGATTGA 972 0.4455 MVGILSLVTGRPGPSGFGSASTAEQVTDGTDATHLTAIVTGGASGIGLETARVLALRKAHVIIGARNIEAAKEAKQLILQENESAKVEILKLDLCSVKSIRSFVDDFMALDLPLNILINNAGVMFCPFQLSEDGIEMQFATNHLGHFLLTNLLLDKMKQTAKASGIEGRIVNLSSIAHTYTYEEGIRFDQINDQIGYSDKKAYGQSKLANILHANELCRRLQEEDVNITANSVHPGVIMTPLMRHSSFLMHFLKLFTFFIWKTVPQGAATTCYVALHPSVKGVSGKYFLDCNEFEPSGLAKDDLLGRKLWDFSNKLIKSISRD 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1296 323 Pfam short chain dehydrogenase 36 183 IPR002347 -
Lele05g1296 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 36 294 IPR036291 -
Lele05g1296 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Lele05g1296 323 Coils Coil 68 88 - -
Lele05g1296 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Lele05g1296 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Lele05g1296 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Lele05g1296 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Lele05g1296 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Lele05g1296 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Lele05g1296 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Lele05g1296 323 Gene3D - 23 320 - -
Lele05g1296 323 PANTHER RETINOL DEHYDROGENASE 14 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1296 Lele-ChrLele05 8072172 8074974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1296 35 255 Miscellaneous Gene Families AT2G29150 31.034 7.35e-08 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1296 05 8072172 8074974 Lele13g1856 13 26464271 26467587 CCT
Lele05g1296 05 8072172 8074974 Lele14g1797 14 24832430 24835769 CCT
Lele05g1296 05 8072172 8074974 Lele15g0555 15 3274311 3275877 CCT
Lele05g1296 05 8072172 8074974 Lele16g0569 16 3206358 3207942 CCT
Lele05g1296 05 8072172 8074974 Lele05g1296 05 8072172 8074974 ECH
Lele05g1296 05 8072172 8074974 Lele07g1344 07 8120010 8122802 hybridization
Lele05g1296 05 8072172 8074974 Lele08g1152 08 7205331 7207892 hybridization