Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1293 ATGGCTTTCTTCTCTGGACTCCGCCGCCTTATTCGCGATACATCTTCCTCCTCGTCGATTCTCTATTCGCAACTTACTTCGATTCGTCTTAGTTCAACTCTCACGTCCCCCAGGCTTTTCGTCAGTGGTCTTTCAAGACTGATGACAGATGAAAAACTAAAGGAAGCATTTGCTCCTTTTGGGCAGCTGGTTGAAGCTAAGGTCATAACTGATAGAATCTCTGGAAGATCAAAGGGATTTGGTTTTGTAACTTACGCCAGCATAGAAGATGCTCAAAAGGCCAAAGAAGGAATGAATGCAAAGTTTTTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCAAGAGAACCTAAACCTCTGCAATCACAGCCTCAGCCCTCTGAAACAGGTTTTACAGTTAACAAGACGGTTGAATGGTGA 423 0.4374 MAFFSGLRRLIRDTSSSSSILYSQLTSIRLSSTLTSPRLFVSGLSRLMTDEKLKEAFAPFGQLVEAKVITDRISGRSKGFGFVTYASIEDAQKAKEGMNAKFLDGWVIFVDPAKPREPKPLQSQPQPSETGFTVNKTVEW 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1293 140 Gene3D - 14 125 IPR012677 -
Lele05g1293 140 FunFam RNA binding protein 24 136 - -
Lele05g1293 140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 105 IPR000504 GO:0003723
Lele05g1293 140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Lele05g1293 140 MobiDBLite consensus disorder prediction 123 140 - -
Lele05g1293 140 PANTHER NUCLEOLAR PROTEIN 8 20 140 - -
Lele05g1293 140 MobiDBLite consensus disorder prediction 117 140 - -
Lele05g1293 140 SUPERFAMILY RNA-binding domain, RBD 36 127 IPR035979 GO:0003676
Lele05g1293 140 SMART rrm1_1 38 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1293 Lele-ChrLele05 8057915 8060372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1293 39 129 Eukaryotic Initiation Factors Gene Family AT3G16380 41.053 2.26e-13 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1293 05 8057915 8060372 Lele05g1293 05 8057915 8060372 ECH
Lele05g1293 05 8057915 8060372 Lele07g1341 07 8106217 8108616 hybridization
Lele05g1293 05 8057915 8060372 Lele08g1147 08 7183272 7188144 hybridization