Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1281 ATGAAAAGACGACATACAGAGAGCTTAGATCTTGCAATCTCTCTAATGCTTCTCTCTCAGCCACCACCACAGCACAAGTCCTTGCCTCAAGAATTTGAGTGCAAGACCTGCAAGCGCAAGTTCTCGTCGTTTCAGGCGCTCGGAGGTCACAGAGCCAGCCACAAGAAGCCCAAACTTGATTCCCAAGTAGAGCTTCCAAAACCCAATTCGGAGAAATCGTTGCACGAGTGCTCTATTTGTGGCCAGCGATTCTCTCTGGGCCAAGCTCTCGGCGGCCACATGAGAAAGCACAGAGCCGCCATGAACGACGGCTCTCCTTACAGAACTGAGGTGGTTTCTGATGTCGCAGTTTTGAAAAGATCTAATAGCAGCAAGAGGGTTATGTGCTTGGACTTGAACTTGACCCCTCTCGAGAACGACTTGAAGTTGCTTTTTGGGAACAAGGCTCCTTCTAGATTTGGAGGCATGAAGGGGGAGAGAGAATCCGAGAGCTTGGACCTCGCCAATTGTCTGATCATGCTATCTCATCACCGTGCTCCCCAGCAGAGACAGGTTGATACTTCAGAATTTGAGTGCAAGACTTGCAAGAGAAAGTTCTCGTCGTTTCAGGCGCTTGGAGGGCACAGGGCCAGCCACAAGAGACCGAAGCTCGACGGAGAAGACGACCTGAAAGCAGAGGCCAAATCTCTCAAGTTAGGGAACAAACCCAGAATGCACGAGTGCTCCATTTGTGGCGTCGAATTCTCGTTGGGCCAAGCACTCGGAGGCCACATGAGGAAGCACAGAGCCGCTCTTCATCAAGACACCAACCCAGTGGAAGAACATGTGAAAGCCAAGGTCCCTGTTCTTAGGAGATCTAATAGTGCCAGAGTATTTTGTTTGGACCTCAACTTAACGCCTCTACAGAATGACTTGAACTTGTTGTTCGGAAATATGGCCCCGGCTCTCACTTGA 954 0.5021 MKRRHTESLDLAISLMLLSQPPPQHKSLPQEFECKTCKRKFSSFQALGGHRASHKKPKLDSQVELPKPNSEKSLHECSICGQRFSLGQALGGHMRKHRAAMNDGSPYRTEVVSDVAVLKRSNSSKRVMCLDLNLTPLENDLKLLFGNKAPSRFGGMKGERESESLDLANCLIMLSHHRAPQQRQVDTSEFECKTCKRKFSSFQALGGHRASHKRPKLDGEDDLKAEAKSLKLGNKPRMHECSICGVEFSLGQALGGHMRKHRAALHQDTNPVEEHVKAKVPVLRRSNSARVFCLDLNLTPLQNDLNLLFGNMAPALT 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1281 317 MobiDBLite consensus disorder prediction 48 69 - -
Lele05g1281 317 SMART c2h2final6 75 97 IPR013087 -
Lele05g1281 317 SMART c2h2final6 239 261 IPR013087 -
Lele05g1281 317 SMART c2h2final6 32 54 IPR013087 -
Lele05g1281 317 SMART c2h2final6 190 212 IPR013087 -
Lele05g1281 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 217 IPR013087 -
Lele05g1281 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 271 IPR013087 -
Lele05g1281 317 ProSitePatterns Zinc finger C2H2 type domain signature. 241 261 IPR013087 -
Lele05g1281 317 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Lele05g1281 317 Gene3D Classic Zinc Finger 30 97 - -
Lele05g1281 317 Gene3D Classic Zinc Finger 187 261 - -
Lele05g1281 317 SUPERFAMILY beta-beta-alpha zinc fingers 32 97 IPR036236 -
Lele05g1281 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Lele05g1281 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Lele05g1281 317 Pfam C2H2-type zinc finger 190 215 - -
Lele05g1281 317 Pfam C2H2-type zinc finger 32 57 - -
Lele05g1281 317 Pfam C2H2-type zinc finger 239 263 - -
Lele05g1281 317 Pfam C2H2-type zinc finger 75 99 - -
Lele05g1281 317 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Lele05g1281 317 ProSitePatterns Zinc finger C2H2 type domain signature. 192 212 IPR013087 -
Lele05g1281 317 PANTHER ZINC FINGER PROTEIN ZAT5 157 302 - -
Lele05g1281 317 SUPERFAMILY beta-beta-alpha zinc fingers 190 261 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1281 Lele-ChrLele05 7979928 7984418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1281 159 310 C2H2 Transcription Factor Family AT2G37430 45.342 8.94e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele05g1281 zf-C2H2_6 9.1e-10 CL0361