Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1279 ATGGCTGGTCGGGTGAGGGTGACTTTTTCTCCGAGGCCCAAGTCCAATGATATACATAAAGCAAAATACCAAACTCTGGTGACAATTGACGCCGCCGTGGAGTGGGTGACGAAAGACGACGACTGGCAAGGCGGGGTATCCATCACTGTTGAGTCCGACATGGCCATAGCCGTCATCATTTCTCTTCCTCTCATATCCTCCCCCCGTCGTTCTTTTCCGTCCAGCTGCCTCCTTCGACCTTCAACATCCTTATACGCTTCCCCTTCCAGTTTGCCCGTACCTCGATATTCCGTAAAGTGCCCTAGCTCTCGCAGCATAGCTTCTTCAACGAGCATTGAAACCCCCGTGAAAAGTTCGCCCGTTTCATTCTTGGACAGAAAAGAGACCGGGTTTCTTCATTTCGCCAAGTATCACGGCCTCGGCAATGACTTCATTTTGATTGACAACAGAGACTCTCTGGAGCCCAAGATCAGCCCAGATAAAGCTGTTGAACTATGTGATCGTAACTTTGGGGTTGGTGCTGATGGAGTTATCTTTGTCATGGCTGGCACCAATGGCGCTGACTATACCATGAGAATCTTCAATTCTGATGGTAGTGAGCCTGAGATGTGTGGAAATGGAATGCGATGCTATGCCAAATTCGTTGCTCAGCTTGACAACTTACAGGGTAGGCAAAGATTTACTGTTCACACTGGGGCTGGCCTGATTATTCCAGAAATTGTTGAGGATGGAAACGTCAGAGTTGACATGGGTGAGCCAATTCTTAAAGCGTCAGATGTGCCTACTAAATTACCTGCAAATAAGGATCACTCAGTTGTTAAGGCAGAGCTAGATGTTGATGGAGTTATCTGGAATGTAACATGTGTTAGCATGGGAAATCCACATTGTGTAACATTTGGTACAAAAGAAAGTCAGAATATATTGGTCGATGGTTTGAATCTAGCAGAAATTGGTCCTAAGTTTGAACATCACGAGGTGTTTCCTGCACGAACGAACACAGAATTTGTCCAAGTTCTGTCCGATCATCACCTAAAGATGCGTGTTTGGGAGCGTGGAGCAGGAGCAACGCTAGCCTGTGGAACTGGAGCTTGTGCCTTAGTTGTTGCAGCAGTTCTCGAGGGTCGTGCCAAGAGGATTTGCAGGGTTGATCTACCCGGAGGGCCATTGGAGATTGAGTGGAAGGAGGAGAATAATCATGTGTATTTAACTGGCCCAGCTGAATTGGTTTTTTACGGATCTTTACCCCTTTAA 1251 0.47 MAGRVRVTFSPRPKSNDIHKAKYQTLVTIDAAVEWVTKDDDWQGGVSITVESDMAIAVIISLPLISSPRRSFPSSCLLRPSTSLYASPSSLPVPRYSVKCPSSRSIASSTSIETPVKSSPVSFLDRKETGFLHFAKYHGLGNDFILIDNRDSLEPKISPDKAVELCDRNFGVGADGVIFVMAGTNGADYTMRIFNSDGSEPEMCGNGMRCYAKFVAQLDNLQGRQRFTVHTGAGLIIPEIVEDGNVRVDMGEPILKASDVPTKLPANKDHSVVKAELDVDGVIWNVTCVSMGNPHCVTFGTKESQNILVDGLNLAEIGPKFEHHEVFPARTNTEFVQVLSDHHLKMRVWERGAGATLACGTGACALVVAAVLEGRAKRICRVDLPGGPLEIEWKEENNHVYLTGPAELVFYGSLPL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1279 416 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 121 415 IPR001653 GO:0008837|GO:0009089
Lele05g1279 416 Pfam Diaminopimelate epimerase 288 409 IPR001653 GO:0008837|GO:0009089
Lele05g1279 416 Pfam Diaminopimelate epimerase 134 254 IPR001653 GO:0008837|GO:0009089
Lele05g1279 416 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 256 406 - -
Lele05g1279 416 TIGRFAM DapF: diaminopimelate epimerase 133 414 IPR001653 GO:0008837|GO:0009089
Lele05g1279 416 ProSitePatterns Diaminopimelate epimerase signature. 195 209 IPR018510 GO:0005737|GO:0008837|GO:0009089
Lele05g1279 416 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 116 255 - -
Lele05g1279 416 FunFam Diaminopimelate epimerase chloroplastic 256 403 - -
Lele05g1279 416 FunFam Diaminopimelate epimerase, chloroplastic 106 255 - -
Lele05g1279 416 SUPERFAMILY Diaminopimelate epimerase-like 132 261 - -
Lele05g1279 416 SUPERFAMILY Diaminopimelate epimerase-like 276 414 - -
Lele05g1279 416 Hamap Diaminopimelate epimerase [dapF]. 132 416 IPR001653 GO:0008837|GO:0009089
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1279 Lele-ChrLele05 7964074 7968734 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1279 05 7964074 7968734 Lele07g1326 07 8011419 8014133 hybridization
Lele05g1279 05 7964074 7968734 Lele08g1133 08 7097294 7099873 hybridization