Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1277 ATGACTATTAGCGAAAGGGCCGAACTAATCAGCCGCATATGTTACAGGGTTGCAGAGACAGAGACAGAGACAAGGGATCTTCCTCCTCCTCTTCCTCTTCCTCCTCGCCCGGAGTTTAGGTTTCAGACGCAAACAACCTTAGTCGTTGAAACAGATAATTCAAGGCCGACAAGCACCACCAGATTCTTGACTAGTAGGGATATTTCCGTAATAACGCCCCTGCCAACTGGCTCCCAACATTTTTCTCTTCTTGAGAGAATATTTGAAAACAGAGGACGAAACGTCGTCGTATCTGGAATCAGGGTTTTAGGTTGCCCTATCTTCGCCTCTTCTCCTTCCTTCCCCCAGAGACCTCACACTATGGAGTCTCTGTCTAGATTGCACCACTGTATCCAACCATTGTACATATCAACTTCTCACCACCGTTTGTCCTTTCCAACCCATTTTTCTTCGGTTTCCTTCAGGGCGCTACCACCACCGGCTTCGCCACTCCAATTTCCTTCTGCATCCATCCGGTTATCACCTCTCAGAGCCTCTTCCTCATCCTCATCTTCACCCACTGATCCCTCACTTCATAAGCCCGGACCCATTCTAACCCGTCTGCTCCAAACCCTAAATCCCCTTCTGTCACCTGTTGTCGAAACTGCAGGCATCGTTGTAGTCGCGTCTGTATTTTTCTTCATGCGTTTTCAGCACATGCCTTCTATTGCTGCTCCGGTGGCGTCACCCACGGTGGAGTCCACCCGAGAGTCGATGGATAGACTTTCGTTTGAAGAAAAAGAGAGAACCATTGAAGAGCAATTGATGGACAACCCCAATAACGTCGAAGCTCTTCGGTCTCTTATGGAGCTTAAAATCAGAGCGCATAAAACTGAGGAGGCTGTTCAGGTCATTGACCGTTTGATTGAACTTGAACCCCAGGACTCTGAGTGGCCGCTTATGAAAGCTCATATGTATATCTATAACGGTGACTACCAACTGGCCAAAAGTTTGTTCGAAGACATTCTGAATAAAGACCCATATCGTTTTGAAGCTTATCACGGCCTTGCAATGGCTACTTCGGAATCGAATGAGCCATTGAACGATTTGGTGAAGAGGGTTGAAAAAGCTGTGGAGTTTTGCAAGAAGGAAAAGAGGAAATCAGATGTCAGAGACTTGAAGCTATTACTTGCGCAGATTAAAGTCATGGAGGGATCCTTTACTGAGGCTCTAAAGGCCTATCAGGCACTTGTCAAGGAAGAACCAAGAGATTTCAGGCCGTACTTATGTCAGGGCATCATATATACCCTGTTGGGAAAGAAAGATGAAGCGGAGAAACAATTTGAGAAGTTCCGGAGGCTCATCCCAAAGAATCACCCTTATAAGGAGTATTTTCAGGATAACATGTTCGCAACCAAGTTTTTCGCGCAGAAGTTTGAGAGGGAGGGAGCTGGAACAAGGAGCTGA 1446 0.4668 MTISERAELISRICYRVAETETETRDLPPPLPLPPRPEFRFQTQTTLVVETDNSRPTSTTRFLTSRDISVITPLPTGSQHFSLLERIFENRGRNVVVSGIRVLGCPIFASSPSFPQRPHTMESLSRLHHCIQPLYISTSHHRLSFPTHFSSVSFRALPPPASPLQFPSASIRLSPLRASSSSSSSPTDPSLHKPGPILTRLLQTLNPLLSPVVETAGIVVVASVFFFMRFQHMPSIAAPVASPTVESTRESMDRLSFEEKERTIEEQLMDNPNNVEALRSLMELKIRAHKTEEAVQVIDRLIELEPQDSEWPLMKAHMYIYNGDYQLAKSLFEDILNKDPYRFEAYHGLAMATSESNEPLNDLVKRVEKAVEFCKKEKRKSDVRDLKLLLAQIKVMEGSFTEALKAYQALVKEEPRDFRPYLCQGIIYTLLGKKDEAEKQFEKFRRLIPKNHPYKEYFQDNMFATKFFAQKFEREGAGTRS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1277 481 ProSiteProfiles TPR repeat profile. 418 451 IPR019734 GO:0005515
Lele05g1277 481 SMART tpr_5 275 308 IPR019734 GO:0005515
Lele05g1277 481 SMART tpr_5 384 417 IPR019734 GO:0005515
Lele05g1277 481 SMART tpr_5 309 342 IPR019734 GO:0005515
Lele05g1277 481 SMART tpr_5 418 451 IPR019734 GO:0005515
Lele05g1277 481 ProSiteProfiles TPR repeat profile. 275 308 IPR019734 GO:0005515
Lele05g1277 481 Gene3D Tetratricopeptide repeat domain 242 471 IPR011990 GO:0005515
Lele05g1277 481 SUPERFAMILY TPR-like 275 459 IPR011990 GO:0005515
Lele05g1277 481 Pfam Tetratricopeptide repeat 389 449 - -
Lele05g1277 481 PANTHER CELLULOSE SYNTHASE OPERON PROTEIN C 261 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1277 Lele-ChrLele05 7953651 7959275 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1277 05 7953651 7959275 Lele13g1843 13 26395998 26397083 CCT
Lele05g1277 05 7953651 7959275 Lele14g1788 14 24786478 24787551 CCT
Lele05g1277 05 7953651 7959275 Lele15g0565 15 3339144 3340229 CCT
Lele05g1277 05 7953651 7959275 Lele16g0579 16 3255076 3256149 CCT
Lele05g1277 05 7953651 7959275 Lele07g1324 07 7989105 7990190 hybridization
Lele05g1277 05 7953651 7959275 Lele08g1130 08 7082320 7083405 hybridization