Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1271 ATGAAAAGCATCTGCTTTAGCCCCAAGACGCCTTCCTTCTCCACCATGACCGGATCTAATCACTCATCGCCATCCTCCGACCCGAGCTCCCCTCCGGCGATGAGCCCTTCTGAATCCAGCATAGACCGCTGCATTGAGGCAGCCCAAGCCTTGATCCCCAAGTGGAACCCGGAAACTTCTGCCCACGCCAACGTCACTTCCTTCTTCTACGACGACAAATCTGAGGCCATGCACTACATCAAATGCGTCAACCAGCTCCACAAGGCAATGCATCTTCTCCACTCCCTACAGAATCCACTCTACTCCCAGAAGCTAGTTCTCGCCAACAGCTTGATGCAGATGGCCATGAAGAGGCTTCAGAAGGAGTTCTACCAAATCCTCTCCGTCAATCGGGCCTTCTTAGACCCCGAATCACTCTCCACCGTCAGTAGAACATCCACCTCCGTCAGTTCCACCATTTCCGATTTCGATGTCGAAGATGCTACTGCACCGGAGGACGACTTCCTAACTACCGGTGATTCTTTCTCTGAATTGGAACGTATCTCTTCGCTCGCCACCAAGGATCTGAAGTCTATAGCAAATTGCATGATCTCTTGCGGATATACGAGAGAATGTTTGAAGGTCTATAAGGTAATTCGAAAATCCATTATCGATGAAGGCTTTCATCGGTTGAACTTGGACAAATTGAAGCCTTCCCAAGTTAATAAGATGGATTGGCCGGTTCTTGATTTGAAAATCAAGGTGTGGTTAGAGACCGTGAAGGTTGCGGTGAGGACGCTCTTAAACGGAGAGAGAAAGTTGTGCGATGATGTCTTCGCCACTTCGGATTCCATCAGAGAGAGTTGCTTCGCCGATATTTCCAGAGACGGAGCCACTATTCTATTCGTATTCCCCCAACACGTCGTCTCCAAAATTAAAAACTCGCCGCCGGACAAAATCTTTCGGGTGCTTGAAATGTACATTGTGTTAACTTCACTATCGCCGGAGATCCAATCCATCTTCTCTTTCTACTCGACCTCCGAAATTTTAAATCAAGTCAACAATTCTCTGCTCCGGCTCAGCGAGTGCGTTCGAACGATGCTTTCTGAATTCGAGTCCACGATCCAAAAGGACACATCCAAGTCGTCGGTAAAATCGGGCGGAGTTCACCCGCTGACCATACAAGCTATGAACTACCTCTCAATCCTCTCGGAATACAGTAACGTCCTAACTGAGATAGTCACTGACTGGAATCTACCACCAAAGTCGCCTGTGCCAGAATATTTACCAGAGAGTCCAGATTCCGATGAAGCGTCGTCATCGACTCCATCGTACTTCGCTAGAATAAATTGGCTGATTTTAGTTCTTAACTGTAAGCTCGACAGCAAAACAAAGCATTGCAAGGACGCTTCATCGTCGTACCTATTTCTGGCAAACAATCTCCAGCACGTGATAGACACAGTGCGAAACTCGAACTTGCAGTACGCGCTGGGCTACGGGTGGATCGGGAAGCACGAAGTGAAGTTGAACGGATTCTTGAGTAAGTACGAGAAGTTGGGGTGGGGCGAAGTGACTTCATGCTTGCCGAGAAATCCAAAGGCGGGGATGATGGCGGAAGAGGCGAGGGTCATATTCAGGAACTTCAACTTCCGTTTTGAGGATGCATACCGGAAACAGAATTTATTCACAGTACCGGACAGGAGATTCAGAGAGGAGATCAGAGAATCGATAGCGAGAAGAATAGTGCCGATGTATGGGGAGTTCTATGAGACGCACAGGACGACTGTGGGATCAGTGAGAGAGATGACAAAGTATGTGACATTTCACCCCGACGACGTGAAAGATTATCTGGCGAACTTGTTCTTTGCCGGGACAACCTTCGGCCGCGTAACGAATCGGGAGACATGTTTTGCTGCCAACCCGTTACAACCAAAGGGTCCAAATCGTCAGATTGTTTCTTGTTCAACGAGTCATCGCCCCAAGGGGCGGAATCTTCTCCGGCGGGGGCTCATGGATCTCAAAAAAGCAGCCGTCCTCAACAGTACTCCCTCTGAACCCCCCACACCCACCACCCCTCGTCCCACTCTCTTCCTCTCCTCTTCCGGCAAGGCGCTCCTCGTTTCCAACTCCGGTAAATCTCTCCAGGTTTCCAATTCCAATAAATCCATTCTCTCCAATTCCGGCAAGCGTTTCGACAAGAAAAAGTACGTCAAGCAGGTCACTGGCCGCCACAATGACACCGAGCTTCACCTCGCCGCTCAGCGTGGCGACGTCGCCGCCATTCGCCACATTTTGGGAGAAATCGATGCCCAGATGATCGGAACCCCTTGTGGGGCCGATTTTGATGCGGAGCTCGAGGAAATTAGGTCCGCCATTTTCAATGAGGTGAACGAATTGGAGGAGACGGCTTTGTTTGTTGCAGCCGAGCGGGGCCACATCGACGTCGTGAAGGAGCTTCTGCCCCATGCCACCAGCGAGGCCCTTTCCTTGAAAAATCAATCCGGCTTCGATCCCTTACATATTGCTGCTAGCCATGGTCACCTAGCCATTGTTCAGCTGTTACTGGACCATGATCCAGGGCTCATAAATACATTGGGACAATCAAATGCAACTCCTCTCATATCAGCAGCTACAAAAGGGCATGTAGATGTTGTTGATCTGTTGTTATCACGAGATCCTAGACAGGTGGAGTTATCTAGGTCCAATGGAAAGAATGCACTCCATTTTGCTGCTCGTCAGGGACATGCTTGTATTGTAAAATCATTACTCAAAAAGGATCCACAACTCACTCGAAGGACTGATAAGAAAGGGCAGACTCCGATGCATATGGCGGTAAAGGGGGTTAGCTGTGAAGTAGTGAAGTTGCTTCTTAATGCAGATCCGGCAACTGTTGCTCTACCTGACAAGTTTAACAATACTGCATTACATATTGCCACCAGGAAGAAGAGGGCAGAGATAGTGAGTGAGCTATTACTTCATTCTGAAACCAATGTCAATGCTCTGACAAGGGACCGTAAAACATCTCTTGACATTGCCGAAGGACTCCCTCCATCTGAGGAAATCCTAGAGATAAGAGATTGCCTGGTTCGTAGCGGTGGGGTTAAAGCCAGTGACCTAATTAACCAACCAAGGGATGAGCTAAGGAGGACCGTGAAACAGATTAGGAAGGAGGTCCATATTCAGCTCGAACAAACTCGTAAGACAAACAGAAACGTGGATGGGATTGCCAAGGAGCTACGTAAGCTGCACAGAGCGGGGATCAACAATGCTACCAACTCAGTTACAGTGGTTGCTTCACTCTTTGCAACAGTTGCATTTTCTGCAGTTTTTGCAGTTCCTGGTGGAGATTTTGATAGTGGGGAGGCCATTATGGTGACCACTCCATCTTTCAAGATCTTCTTTATTTCTAATGCAATTTCACTCTTTACATCACTGGTTGTTGTCGTGGTTCAGATCACAGTTGTTAGAGGGGAGACAAAATCTGAAAGGAGGGTGATGAGGGTGATTAATAAGCTGATGTGGTTAGCCTCTATTTGTACAACGATTGCATTCATTTCATCATCTTATATAGTTGTTGGTCGACGTAACATATGGGCTGGAATCTTTATTACTGTGATAGGGGGAGTGATGATGGCGAGCGTTCTTGGTGCTATGACATACTACGTGGTTAAATACAAAAGTATTCGGAGGGCGAGAAAGAAAGCCAAATTTGCCAAGAAACATTCAGGGCATCATTCAGATTCAGAATCAGAAATAAATCCCATTTATGCCATTTGA 3756 0.4782 MKSICFSPKTPSFSTMTGSNHSSPSSDPSSPPAMSPSESSIDRCIEAAQALIPKWNPETSAHANVTSFFYDDKSEAMHYIKCVNQLHKAMHLLHSLQNPLYSQKLVLANSLMQMAMKRLQKEFYQILSVNRAFLDPESLSTVSRTSTSVSSTISDFDVEDATAPEDDFLTTGDSFSELERISSLATKDLKSIANCMISCGYTRECLKVYKVIRKSIIDEGFHRLNLDKLKPSQVNKMDWPVLDLKIKVWLETVKVAVRTLLNGERKLCDDVFATSDSIRESCFADISRDGATILFVFPQHVVSKIKNSPPDKIFRVLEMYIVLTSLSPEIQSIFSFYSTSEILNQVNNSLLRLSECVRTMLSEFESTIQKDTSKSSVKSGGVHPLTIQAMNYLSILSEYSNVLTEIVTDWNLPPKSPVPEYLPESPDSDEASSSTPSYFARINWLILVLNCKLDSKTKHCKDASSSYLFLANNLQHVIDTVRNSNLQYALGYGWIGKHEVKLNGFLSKYEKLGWGEVTSCLPRNPKAGMMAEEARVIFRNFNFRFEDAYRKQNLFTVPDRRFREEIRESIARRIVPMYGEFYETHRTTVGSVREMTKYVTFHPDDVKDYLANLFFAGTTFGRVTNRETCFAANPLQPKGPNRQIVSCSTSHRPKGRNLLRRGLMDLKKAAVLNSTPSEPPTPTTPRPTLFLSSSGKALLVSNSGKSLQVSNSNKSILSNSGKRFDKKKYVKQVTGRHNDTELHLAAQRGDVAAIRHILGEIDAQMIGTPCGADFDAELEEIRSAIFNEVNELEETALFVAAERGHIDVVKELLPHATSEALSLKNQSGFDPLHIAASHGHLAIVQLLLDHDPGLINTLGQSNATPLISAATKGHVDVVDLLLSRDPRQVELSRSNGKNALHFAARQGHACIVKSLLKKDPQLTRRTDKKGQTPMHMAVKGVSCEVVKLLLNADPATVALPDKFNNTALHIATRKKRAEIVSELLLHSETNVNALTRDRKTSLDIAEGLPPSEEILEIRDCLVRSGGVKASDLINQPRDELRRTVKQIRKEVHIQLEQTRKTNRNVDGIAKELRKLHRAGINNATNSVTVVASLFATVAFSAVFAVPGGDFDSGEAIMVTTPSFKIFFISNAISLFTSLVVVVVQITVVRGETKSERRVMRVINKLMWLASICTTIAFISSSYIVVGRRNIWAGIFITVIGGVMMASVLGAMTYYVVKYKSIRRARKKAKFAKKHSGHHSDSESEINPIYAI 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1271 1251 SMART ANK_2a 792 821 IPR002110 GO:0005515
Lele05g1271 1251 SMART ANK_2a 737 766 IPR002110 GO:0005515
Lele05g1271 1251 SMART ANK_2a 929 959 IPR002110 GO:0005515
Lele05g1271 1251 SMART ANK_2a 861 891 IPR002110 GO:0005515
Lele05g1271 1251 SMART ANK_2a 827 857 IPR002110 GO:0005515
Lele05g1271 1251 SMART ANK_2a 895 924 IPR002110 GO:0005515
Lele05g1271 1251 SMART ANK_2a 963 993 IPR002110 GO:0005515
Lele05g1271 1251 Pfam Exo70 exocyst complex subunit 248 611 IPR046364 GO:0000145|GO:0005546|GO:0006887
Lele05g1271 1251 Pfam Ankyrin repeat 965 995 IPR002110 GO:0005515
Lele05g1271 1251 MobiDBLite consensus disorder prediction 1 37 - -
Lele05g1271 1251 Coils Coil 1037 1057 - -
Lele05g1271 1251 Pfam Domain of unknown function 1080 1184 IPR026961 -
Lele05g1271 1251 MobiDBLite consensus disorder prediction 1230 1251 - -
Lele05g1271 1251 SUPERFAMILY Ankyrin repeat 739 1006 IPR036770 -
Lele05g1271 1251 FunFam Ankyrin repeat-containing protein ITN1 888 1008 - -
Lele05g1271 1251 ProSiteProfiles Ankyrin repeat profile. 929 951 IPR002110 GO:0005515
Lele05g1271 1251 ProSiteProfiles Ankyrin repeat profile. 963 996 IPR002110 GO:0005515
Lele05g1271 1251 SUPERFAMILY Cullin repeat-like 67 614 IPR016159 -
Lele05g1271 1251 MobiDBLite consensus disorder prediction 1 39 - -
Lele05g1271 1251 ProSiteProfiles Ankyrin repeat region circular profile. 929 951 - -
Lele05g1271 1251 FunFam Ankyrin repeat-containing protein ITN1 714 853 - -
Lele05g1271 1251 Gene3D - 887 1016 IPR036770 -
Lele05g1271 1251 ProSiteProfiles Ankyrin repeat profile. 827 850 IPR002110 GO:0005515
Lele05g1271 1251 Pfam Ankyrin repeats (3 copies) 869 954 IPR002110 GO:0005515
Lele05g1271 1251 Pfam Ankyrin repeats (3 copies) 742 850 IPR002110 GO:0005515
Lele05g1271 1251 Gene3D - 705 886 IPR036770 -
Lele05g1271 1251 ProSiteProfiles Ankyrin repeat region circular profile. 895 918 - -
Lele05g1271 1251 ProSiteProfiles Ankyrin repeat profile. 895 927 IPR002110 GO:0005515
Lele05g1271 1251 ProSiteProfiles Ankyrin repeat region circular profile. 827 850 - -
Lele05g1271 1251 Gene3D Exocyst complex component Exo70 61 619 - -
Lele05g1271 1251 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 709 1232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1271 Lele-ChrLele05 7919670 7925390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1271 680 1251 Miscellaneous Gene Families AT3G09550 69.588 0.0 777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1271 05 7919670 7925390 Lele06g1135 06 7048135 7050431 ECH
Lele05g1271 05 7919670 7925390 Lele05g1271 05 7919670 7925390 ECH
Lele05g1271 05 7919670 7925390 Lele07g1319 07 7961694 7964416 hybridization
Lele05g1271 05 7919670 7925390 Lele08g1124 08 7052152 7058064 hybridization