Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1254 ATGGATGTTAAGGAAGCAGAAAGGGTAGTTGTTGCAAAACCAGTAGCTTCAAGACCTACTTGCCCACCTTTTAGATCCTTCTCCGAGCTACTTGCAGGTGCCATCAATGCGTCTCCATCTATTGAATCTTCTCGAGCCACAGTTTCAGCCATTAGACCAAAGACTGTGAGGTTCAAAGCAGCCATGAATTGCCCGCCTCCCGCCAGGTTTATTTCTTCTGAGGCTAACCCATCTTACAAAAGTCATAAACCAGGCACTAATCAAAGAGTTGTTTACAAGCCTACGGCTAAGTTTGTCTCCAAGGCCACTGTTTCTCTTTTGGCAAATATGGGAAATTATAGTACCAGTCACGGCCAGCCGTTTCAACATCCCAATAAGGAGAAACTGAGGACCAATTTGAGCTCAATGAATCATCAGAACACTAACACACCACGTGCTGAATCAAATCTGGCAATTGAATGCTTCAAGATGGTACAGCAGAGCCCAGAAGAGGACCAGAAAACTTCGCCATCTACTAGTAATGGTTGTGATAGACCTTGTTATGATGGGTATAACTGGAGGAAATATGGTCAGAAGCAAGTTAAAGGAAGCGAGTATCCAAGGAGTTATTACAAATGCACGCATCCCAATTGCCCAGTGAAGAAGAAGGTTGAAAGATCATTTGATGGGCAGATTGCAGAAATTGTGTACAAAGGGGAACACAACCATTCAAAGCCTCATCCTCCTAAGCGCAACTCGGCAGGAACACAAGGTTTGGGAATCGTGTCTGATGGATTGAATGAAGATACTAATTGTAATAATAACCATTTAAGGGGTAATCCTAACAGTGAGAGGAATGAAAATGGAATAGAGAACCAGAGTGAGGCAGGTTATCTTGTCAAAGCTGGAGGAAGCCCTGAGAATTCAGATGCTCAAAGTGAGGAATGTGAGGAAGATGAACAACCAAAAAGTAAAAGAAGGAAAAAAGAGAATAAATCCAATGAAGTAGCAGAGGCAGAGGAAGGTTTAGTGCAGCCTCAAGTGGTGGTTCAGAGTTCTAAAGATTCTGAAGTACTCGGAGACGGCTTTCGCTGGAGGAAATATGGGCAGAAGGTGGTGAAGGGCAATCCATATCCCAGAAGTTATTACAGATGCACTAACATAAAGTGCAGTGCTCGGAAACATGTGGAAAGATCAATAGATGATCCAAAAGCATTTATCACTACTTATGAGGGGAAACACAACCATGAGATGCCACGCAAAACTATAGGTTCTGTGGCCTCTGAAAAAGTCAAGCCATGA 1281 0.4317 MDVKEAERVVVAKPVASRPTCPPFRSFSELLAGAINASPSIESSRATVSAIRPKTVRFKAAMNCPPPARFISSEANPSYKSHKPGTNQRVVYKPTAKFVSKATVSLLANMGNYSTSHGQPFQHPNKEKLRTNLSSMNHQNTNTPRAESNLAIECFKMVQQSPEEDQKTSPSTSNGCDRPCYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGQIAEIVYKGEHNHSKPHPPKRNSAGTQGLGIVSDGLNEDTNCNNNHLRGNPNSERNENGIENQSEAGYLVKAGGSPENSDAQSEECEEDEQPKSKRRKKENKSNEVAEAEEGLVQPQVVVQSSKDSEVLGDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCSARKHVERSIDDPKAFITTYEGKHNHEMPRKTIGSVASEKVKP 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1254 426 ProSiteProfiles WRKY domain profile. 347 412 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele05g1254 426 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 110 414 IPR044810 GO:0003700
Lele05g1254 426 MobiDBLite consensus disorder prediction 232 339 - -
Lele05g1254 426 ProSiteProfiles WRKY domain profile. 182 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele05g1254 426 MobiDBLite consensus disorder prediction 311 330 - -
Lele05g1254 426 FunFam WRKY transcription factor 165 240 - -
Lele05g1254 426 SUPERFAMILY WRKY DNA-binding domain 347 412 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele05g1254 426 Gene3D WRKY domain 156 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele05g1254 426 Gene3D WRKY domain 337 413 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele05g1254 426 SUPERFAMILY WRKY DNA-binding domain 179 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele05g1254 426 MobiDBLite consensus disorder prediction 249 286 - -
Lele05g1254 426 Pfam WRKY DNA -binding domain 182 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele05g1254 426 Pfam WRKY DNA -binding domain 354 410 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele05g1254 426 SMART WRKY_cls 352 411 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele05g1254 426 SMART WRKY_cls 180 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele05g1254 426 FunFam WRKY transcription factor 338 413 - -
Lele05g1254 426 MobiDBLite consensus disorder prediction 405 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1254 Lele-ChrLele05 7845020 7846663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1254 354 426 WRKY Transcription Factor Family AT2G37260 48.718 1.40e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele05g1254 WRKY 1.2e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1254 05 7845020 7846663 Lele07g1300 07 7881151 7882814 hybridization
Lele05g1254 05 7845020 7846663 Lele08g1107 08 6971772 6973472 hybridization