Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1248 ATGCCGCCTAAGCAGCAATCGAAAGCTGATATAGCGAAGAAGCAGAAGATCGTAGAGGATAAAACCTTTGGTCTAAAAAACAAGAATAAGAGCAAAAATGTCCAGAAATACGTTCAGAACCTCCAGCAGTCCGTGCAGCCGAAGCCTGATCCTTCCAAAACAGCTGCCAAGAAAAAGAAGGAGGAGGACAAGGCCAAGGAGAAGGAGCTAAATGAGTTGTTCAAAATAGCCATTACCCAGCCTAAAGTGCCAGTTGGTGTTGATCCAAAGTCCATAGTATGTGAGTTTTTCAAAGCAGGACAGTGTACTAAGGGCTTTAAATGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGCGATAAGCGCGACCAGGAAACGATGGAGGATTGGGATCAAGAGACCCTCGAGAAGGTGGTGGAGTCAAAGAAAACTGAGTATCAACAGAATAAACCAACTGACATAGTCTGTAAACATTTTTTGGAGGCAGTGGAGAAGAAGCAATATGGTTGGTTTTGGGTCTGCCCAAATGGTGGTAAGAATTGCCACTATAGACATGCCCTTCCCCCTGGATATGTTTTAAAATCTCAAATGAAGGCCCTGTTGGAGGAAGAAGCTAATAAGATGCCAATTGAGGAGGAGATTGAAGATCAGCGCTCCAAATTGAAAACTACTACTCCTATGACTCCTGAGTTATTCATGCAATGGAAGAAGAAGAAGATTGAAGAAAGAGATGCCAATTTGGCTGAACAACAGGCAGAGAGAGCTAAGAATGATCGCATGAGTGGTCGCGAGCTATTTTTGTCTAATGCTAGCTTGTTTGTCGATGATGCTGAGGCATATGACAAGTATCAAAGAGAGCCAGAATCTAACGATGATGAGCAGAAGCCACGGGCAAATGGCAATGCTGATGATGGTCCTAGCGCCTCAACAGCAGCTGATGCTGAAGGAGAAGCTAATGATGAAGAGATTGATATAGACGATGATGATGAGCTAGACATGGATGAATTGAATGAATTGGAAGCAAGTTTATCGAAGACATCAATACAAATAAAGGAGCCAGGAGCTGAAGCTTAA 1098 0.429 MPPKQQSKADIAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLQQSVQPKPDPSKTAAKKKKEEDKAKEKELNELFKIAITQPKVPVGVDPKSIVCEFFKAGQCTKGFKCKFSHDLNVQRKGEKIDIYSDKRDQETMEDWDQETLEKVVESKKTEYQQNKPTDIVCKHFLEAVEKKQYGWFWVCPNGGKNCHYRHALPPGYVLKSQMKALLEEEANKMPIEEEIEDQRSKLKTTTPMTPELFMQWKKKKIEERDANLAEQQAERAKNDRMSGRELFLSNASLFVDDAEAYDKYQREPESNDDEQKPRANGNADDGPSASTAADAEGEANDEEIDIDDDDELDMDELNELEASLSKTSIQIKEPGAEA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1248 365 Pfam DRG Family Regulatory Proteins, Tma46 216 294 IPR032378 -
Lele05g1248 365 SUPERFAMILY CCCH zinc finger 89 113 IPR036855 GO:0046872
Lele05g1248 365 MobiDBLite consensus disorder prediction 40 64 - -
Lele05g1248 365 MobiDBLite consensus disorder prediction 292 307 - -
Lele05g1248 365 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Lele05g1248 365 Gene3D - 87 204 - -
Lele05g1248 365 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Lele05g1248 365 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Lele05g1248 365 MobiDBLite consensus disorder prediction 292 341 - -
Lele05g1248 365 Coils Coil 246 266 - -
Lele05g1248 365 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 363 - -
Lele05g1248 365 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Lele05g1248 365 MobiDBLite consensus disorder prediction 323 341 - -
Lele05g1248 365 Gene3D - 205 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1248 Lele-ChrLele05 7805779 7809109 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele05g1248 DFRP_C 4.9e-18 No_clan