Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1246 ATGGCCGCCGCAGCTCGCCCTCTTGTCACCATCCAATCACTCGAGGGTGACATGGCCACTGATGCTGCTCCAACTGTTCATCTTCCTGATGTCATGAAGGCTGCCATTCGCCCAGACATCGTCACCTTCGTTCATGCCCACATTTCTAAGAACAGTCGCCAACCCTATGCCGTCAGCAAGCGTGCTGGTCACCAGACCTCTGCCGAATCATGGGGTACTGGCCGTGCTGTGTCTCGTATCCCCCGTGTCCCCGGCGGCGGCACCCACCGTGCTGGTCAGGGTGCTTTTGGTAATATGTGTCGTGGGGGTCGTATGTTCGCTCCTACTAAGATTTGGCGCCGATGGCACCGTAAGATCAATGTCAATCAGAAGCGTTACGCCGTCGTTTCGGCCATTGCTGCTTCGGCAATCCCATCCATTGTCATGGCTCGTGGCCACAGAATTGAGTCTGTTCCGGAAATGCCTCTTGTGGTCAGCGACTCAGCTGAGGGTGTTGAGAAGACTAAGGATGCTATCAAGGTGATGAAGCAGATCGGCGCTTTTCCTGATGCCGAGAAAGCAAAGGATAGCCACTCCATCAGACCTGGTAAGGGGAAAATGAGAAATCGCCGATACATCTCTCGCAAGGGTCCTCTGATTGTGTATGGAACTGAAGGAGCCAAGGCTGTGAAAGCTTTTAGAAACATTCCAGGGGTCGAGGTTGCTAATGTTGAGAGGCTGAACCTTCTCAAGTTAGCTCCTGGTGGTCATCTGGGCAGGTTCGTTATTTGGACTAAGTCTGCTTTTGAGAAACTTGATTCGATTTATGGGTCGTTCGACAAATCTTCAGAGAAGAAGAAAGGATACTCTCTTCCAAGGGCCAAAATGGTTAATAGTGACTTGGCTAGGATTATCAACTCTGATGAGATTCAATCCGTTGTGAGACCCATCAAGAAGGAAATTAAGAGGGCTACACTCAAGAAGAACCCGCTCAAGAACCTGAATGCTATGTTGAAACTGAACCCATATCATAAGACTGCTAAGAGGATGGCTCTTCTTGCTGAGGCTCAACGGGTTAAAGCAAAGAAAGAGAAGCTTGATAATAAGAGGAGTTCTATCTCTAAGGAGGAGGCTTCTGCTATTAAGGCTGCAGGAAAAGCGTGGTATCAAACCATGGTGTCGGACTCTGATTATGCAGAATTTGAGAACTTTTCGAAGTGGTTGGGTGTTTCACAGTGA 1218 0.4934 MAAAARPLVTIQSLEGDMATDAAPTVHLPDVMKAAIRPDIVTFVHAHISKNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSIVMARGHRIESVPEMPLVVSDSAEGVEKTKDAIKVMKQIGAFPDAEKAKDSHSIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKSSEKKKGYSLPRAKMVNSDLARIINSDEIQSVVRPIKKEIKRATLKKNPLKNLNAMLKLNPYHKTAKRMALLAEAQRVKAKKEKLDNKRSSISKEEASAIKAAGKAWYQTMVSDSDYAEFENFSKWLGVSQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1246 405 SUPERFAMILY Ribosomal protein L4 20 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lele05g1246 405 FunFam 60S ribosomal protein L4 3 308 - -
Lele05g1246 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Lele05g1246 405 MobiDBLite consensus disorder prediction 54 94 - -
Lele05g1246 405 MobiDBLite consensus disorder prediction 54 73 - -
Lele05g1246 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lele05g1246 405 Coils Coil 342 369 - -
Lele05g1246 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Lele05g1246 405 Pfam Ribosomal protein L4/L1 family 27 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Lele05g1246 405 PANTHER 60S RIBOSOMAL PROTEIN L4 4 398 IPR045240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1246 Lele-ChrLele05 7798916 7800726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1246 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.921 0.0 683