Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1244 ATGTTGGATCTTAATCTCAACGTCGTTTCCTCTGATTCCGCGTCCAATTCCCTCGACGTGCCTGCCGAGAATGTTGTGCTACTTTCTGGCAGCCAAATGGATAGCTCTGGAAGCTTCAATTCTTCCATCGTCAATGCCGATACCTCCACCAATACTTTTGATGAAGACTCTTGCTCTTACGGTGATGCCTTTGCTAACAACTTTGGAACAGTGCATAAGAATAACATAGATGATGGCACAAACTACAAAGCAGTTGATCTTCTATTTGGTGAAGGTGAAGATGCCTGGGATCGGACCATCCAGCTTTTTCCGATCGCCGGTGCCGAAGAGGGTCGTGTCACTGAATTGGGAATCGGTCAGCGATTTCCAGGTTCGTCTTCAAGTAAGGGATGGTTGGATTTCATGTGCAAGGAGGTGAGTCCCGGTGGCAAGCCGGAACAGAGGATGCCGCCGCCGCCGCCGCCACAGCAGAAACCGCAGGTCAAGAAGAGTCGGAGGGGACCGAGGTCGCGGAGCTCACAGTATCGTGGTGTTACATTTTATCGAAGAACTGGAAGATGGGAATCGCATATATGGGATTGTGGAAAACAAGTTTATTTGGGCGGATTTGATACAGCACATGCTGCGGCAAGGGCATATGATCGAGCTGCAATCAAGTTCCGTGGCCTTGATGCTGATATTAATTTCAATGTTAGTGATTATGAGGAGGATATAAAGCAGATGAGTAATTTCACAAAGGAAGAGTTCGTGCATATTCTGCGGCGACAGAGCACTGGCTTTTCAAGGGGAAGCTCTAAATATAGAGGAGTCACTCTGCATAAATGTGGGCGATGGGAAGCTCGCATGGGGCAGTTTCTAGGGAAGAAGTATATATATCTCGGGCTATTTGATAGCGAAATAGAGGCTGCAAGGGTGCTACAATCTTATGAAACCAGGGCATATGATAAAGCGGCTATAAAATGCAATGGGAGGGAAGCAATGACGAACTTTGAGCCAAGCTCATACGAAGGGAACATAATCTCTCAGGCAGAGAATGAAGATCGCAACCCAAATCTTGATCTTAGCTTGGCCATTGCTCCGCCTGCTTTCTCTAATGGTTTCCAAGTCCAGCATGGCTGGGCCAATCTTCCTGTTGATGGGAGAGTTGCGTTCGAGAACTCTGCATCAAGGTTATTGAAGGGTCAGCAGTCTCATGTTTTCCCGCTTGCACCCCAGTATCCTTCAGCCTGGAATAGTACTGATTTCTTTCCCATTAATCAGGAAAGAGCAATGGAGAAAAGAATGGAAACTAACTCCCTGCCAAACTGGGTATTTCAATACCAAGGTCCATATGGCGAGGCAACGTTGGTTCCATCCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACAAGGTTACCACCACCAGCAGCTGATAGTCAGATTCATTTTCCAAACATGACCATCCATCCTTAG 1455 0.4722 MLDLNLNVVSSDSASNSLDVPAENVVLLSGSQMDSSGSFNSSIVNADTSTNTFDEDSCSYGDAFANNFGTVHKNNIDDGTNYKAVDLLFGEGEDAWDRTIQLFPIAGAEEGRVTELGIGQRFPGSSSSKGWLDFMCKEVSPGGKPEQRMPPPPPPQQKPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNVSDYEEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARVLQSYETRAYDKAAIKCNGREAMTNFEPSSYEGNIISQAENEDRNPNLDLSLAIAPPAFSNGFQVQHGWANLPVDGRVAFENSASRLLKGQQSHVFPLAPQYPSAWNSTDFFPINQERAMEKRMETNSLPNWVFQYQGPYGEATLVPSFSAAASSGFPSTRLPPPAADSQIHFPNMTIHP 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1244 484 MobiDBLite consensus disorder prediction 145 159 - -
Lele05g1244 484 CDD AP2 174 232 IPR001471 GO:0003700|GO:0006355
Lele05g1244 484 Pfam AP2 domain 265 304 IPR001471 GO:0003700|GO:0006355
Lele05g1244 484 Pfam AP2 domain 174 222 IPR001471 GO:0003700|GO:0006355
Lele05g1244 484 ProSiteProfiles AP2/ERF domain profile. 174 230 IPR001471 GO:0003700|GO:0006355
Lele05g1244 484 SUPERFAMILY DNA-binding domain 265 332 IPR016177 GO:0003677
Lele05g1244 484 ProSiteProfiles AP2/ERF domain profile. 266 331 IPR001471 GO:0003700|GO:0006355
Lele05g1244 484 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 147 352 - -
Lele05g1244 484 SMART rav1_2 174 236 IPR001471 GO:0003700|GO:0006355
Lele05g1244 484 SMART rav1_2 266 337 IPR001471 GO:0003700|GO:0006355
Lele05g1244 484 MobiDBLite consensus disorder prediction 461 484 - -
Lele05g1244 484 SUPERFAMILY DNA-binding domain 173 232 IPR016177 GO:0003677
Lele05g1244 484 Gene3D AP2/ERF domain 265 332 IPR036955 GO:0003700|GO:0006355
Lele05g1244 484 Gene3D AP2/ERF domain 173 232 IPR036955 GO:0003700|GO:0006355
Lele05g1244 484 PRINTS Ethylene responsive element binding protein signature 313 333 IPR001471 GO:0003700|GO:0006355
Lele05g1244 484 PRINTS Ethylene responsive element binding protein signature 267 278 IPR001471 GO:0003700|GO:0006355
Lele05g1244 484 CDD AP2 265 333 IPR001471 GO:0003700|GO:0006355
Lele05g1244 484 MobiDBLite consensus disorder prediction 140 175 - -
Lele05g1244 484 FunFam AP2-like ethylene-responsive transcription factor 173 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1244 Lele-ChrLele05 7792975 7795573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1244 161 357 AP2-EREBP Transcription Factor Family AT4G36920 77.000 1.41e-90 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lele05g1244 AP2 1.6e-05 CL0081