Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1239 ATGGCTGATGCTCCGACCAGTCCCGGCGCTGGTGGTAGCCACGAGAGCGGTGATCAGAGCCCCCGCTCTAATGTCAGAGAGCAGGACAGGTACCTGCCCATCGCCAATATCAGCCGAATCATGAAGAAGGGACTTCCTCCTAATGGAAAAATCGCCAAGGATGCCAAGGAGACCATGCAGGAATGCGTTTCCGAGTTCATCAGCTTTATCACCAGCGAGGCGAGTGATAAGTGTCAGAGGGAAAAGAGGAAGACGATCAATGGCGATGATTTACTTTGGGCAATGGCAACTTTAGGGTTCGAGGATTACCTCGATCCTCTGAAGATTTATCTGAGCAGATACAGGGAGGGTGATACCAAGGGTTCGGCGAAGGGCGGAGAAGTATCTGCCAAGAAAGATGTTCAACCAAGTCCTACTGCTCAGCTCGCCCATGAAGGTTCTTTCTCACAAGGTGTTGACTATACAAATTCTCAGCCGCAGGTTCAACGTATGATGGTTCCTATGCGAGGCCCAGAATAG 519 0.5106 MADAPTSPGAGGSHESGDQSPRSNVREQDRYLPIANISRIMKKGLPPNGKIAKDAKETMQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYLDPLKIYLSRYREGDTKGSAKGGEVSAKKDVQPSPTAQLAHEGSFSQGVDYTNSQPQVQRMMVPMRGPE 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1239 172 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 141 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele05g1239 172 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele05g1239 172 Gene3D Histone, subunit A 18 152 IPR009072 GO:0046982
Lele05g1239 172 MobiDBLite consensus disorder prediction 118 172 - -
Lele05g1239 172 MobiDBLite consensus disorder prediction 1 30 - -
Lele05g1239 172 MobiDBLite consensus disorder prediction 134 163 - -
Lele05g1239 172 SUPERFAMILY Histone-fold 28 129 IPR009072 GO:0046982
Lele05g1239 172 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Lele05g1239 172 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Lele05g1239 172 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Lele05g1239 172 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Lele05g1239 172 FunFam Nuclear transcription factor Y subunit B-3 20 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1239 Lele-ChrLele05 7760819 7763370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1239 7 170 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.023 7.98e-84 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele05g1239 CBFD_NFYB_HMF 1e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1239 05 7760819 7763370 Lele06g1105 06 6883098 6885552 ECH
Lele05g1239 05 7760819 7763370 Lele05g1239 05 7760819 7763370 ECH
Lele05g1239 05 7760819 7763370 Lele07g1286 07 7789633 7791301 hybridization
Lele05g1239 05 7760819 7763370 Lele08g1094 08 6892821 6897131 hybridization