Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1221 ATGCTTTGCTTGCTTATAGAATTTCGGTCAATATACATTGTGCTTGAGCTGAAGGGGAATCGGACGATCACCTTGGAGGTGGAGAGTTCCGACACCATTGATAATGTCAAGGCTAAGATACAGGATAAGGAAGGGATTCCCCCTGACCAGCAGAGGCTCATCGTCGCCGGCAAGCAACTCGAGGACGGTCGCACTCTCGCCAATTACAATATCCAGGAGGAGTCCACCCTCCGCCTGGTTCTCCGCCTGAGGGGAGGCTTGCAAATCTTAGTCAAAACCCTTACCGGCAAGACCATCACCCTCGAGGTAGAAAGCTCTGACACCATCGATAACGCCAAAGCCAAGATACAGGACAAGGAAGGTATCCCTCCCGCTCAACAGCGTTTGATTTTCGCCGGTAAGCAATTGGAGGACGGTAGGACTCTTGCCGTTTATAACATCCACAAGGAATCCACTTTTCATCTGGTGCTTCGACTCTGTGGGGGAATGCAGATTTTTGTGAATACTCTGACTGGCAAGACGATCACTCTGGAGGTGGAGAGCTCGGACACCATAGATAATGTCGAGGCAAAGATTCAGGACAAGGAGGGAATTCCGCCTGACCAACAACGTCTGATCTTCGCTGGCAAACAACTTGAAGATGGACGCACTCTCGCTGATTATAACATTCAGAAGGAGTCTACCCTTCACCTTGTCCTGAGGCTGCGTGGTGGGGATGTGAAATGA 726 0.5041 MLCLLIEFRSIYIVLELKGNRTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIVAGKQLEDGRTLANYNIQEESTLRLVLRLRGGLQILVKTLTGKTITLEVESSDTIDNAKAKIQDKEGIPPAQQRLIFAGKQLEDGRTLAVYNIHKESTFHLVLRLCGGMQIFVNTLTGKTITLEVESSDTIDNVEAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDVK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1221 241 ProSiteProfiles Ubiquitin domain profile. 11 86 IPR000626 GO:0005515
Lele05g1221 241 CDD Ubl_ubiquitin 163 238 - -
Lele05g1221 241 PRINTS Ubiquitin signature 194 214 IPR019956 -
Lele05g1221 241 PRINTS Ubiquitin signature 173 193 IPR019956 -
Lele05g1221 241 PRINTS Ubiquitin signature 215 236 IPR019956 -
Lele05g1221 241 ProSitePatterns Ubiquitin domain signature. 37 62 IPR019954 -
Lele05g1221 241 SUPERFAMILY Ubiquitin-like 86 162 IPR029071 -
Lele05g1221 241 FunFam Polyubiquitin 3 164 238 - -
Lele05g1221 241 SUPERFAMILY Ubiquitin-like 11 86 IPR029071 -
Lele05g1221 241 ProSiteProfiles Ubiquitin domain profile. 87 162 IPR000626 GO:0005515
Lele05g1221 241 FunFam Ubiquitin-60S ribosomal protein 87 163 - -
Lele05g1221 241 Pfam Ubiquitin family 19 84 IPR000626 GO:0005515
Lele05g1221 241 Pfam Ubiquitin family 165 236 IPR000626 GO:0005515
Lele05g1221 241 Pfam Ubiquitin family 89 159 IPR000626 GO:0005515
Lele05g1221 241 ProSiteProfiles Ubiquitin domain profile. 163 238 IPR000626 GO:0005515
Lele05g1221 241 ProSitePatterns Ubiquitin domain signature. 113 138 IPR019954 -
Lele05g1221 241 Gene3D - 9 86 - -
Lele05g1221 241 Gene3D - 163 241 - -
Lele05g1221 241 Gene3D - 87 162 - -
Lele05g1221 241 SMART ubq_7 87 158 IPR000626 GO:0005515
Lele05g1221 241 SMART ubq_7 12 82 IPR000626 GO:0005515
Lele05g1221 241 SMART ubq_7 163 234 IPR000626 GO:0005515
Lele05g1221 241 PANTHER UBIQUITIN 163 238 - -
Lele05g1221 241 SUPERFAMILY Ubiquitin-like 162 238 IPR029071 -
Lele05g1221 241 FunFam Polyubiquitin 11 11 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1221 Lele-ChrLele05 7664514 7669376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1221 21 87 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 91.045 2.90e-37 125