Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1220 ATGCTTGTGCACGCCAAGATGCTGGCTCAACATAACTTGGCTTCATCAAGTTCCCGTTGCAATTCCCCAGTGCGGGGGGCCCACCCTCCACCCCCCACTCACGGCTTTCTTTTTCGGATTTTCATTCCTGATCTTCTTGTATTTCTTCTGATGTATCATATTCGGTTAGGTTTAGATGGTTTGTTATTATGCAGGTTTCTTGATGCTGATGGTTCATATACAACAGAAAAGCTAATCAATATTACCAGCGAAAACTGGTTTTCCCCTGGCCTTTTCCTTGTACAGGTTTTGGAAGTGGGTATATTTCTTCATTTGGTCTCGTCCATTGCATTATCTGAATTGCAGATGGTATTACTGGAACATTTGTCATGGAACTTCATGCACATCATGGCTCTAGATCTAATTGATGCCTTGAGGCGATGGAATATGGATGTTGTGCCTCAGACTGGAAGGCGCTCTACCTATTTCAGTGGAGAGAGGCAATCTGTGAGTAGATGGCTTCAAGTGAGTGGACTTACATTGGACTGTTGGTTTTACCCTGTGGTTGAGGACACTATGAGTGGCAAGTGTTTGATGATTTCTTGCTTCGCAGTGATTGTTATGGGACACAGACATTTATATAGCATATCTCAAATGTTTAGGAGTGAGCATGAACAGAATTGGAATTATATGCATACTGATCAACATAATGTGCAACTAGGTAGGGCTAGCACTTCAGAGAATGGTTCTTTTATTGATCCGTTAGAAAATATGTCTATAGATGGCAGCTCTTTGGATGCTTCTTGGAACAATGCCGCAATGCCAAATGGATATGCATCCTCGAGCATCAACATTGAATTACCGCCTCGTCAATCAGATGCATCAAGATCTTCTCATGATCATTTTTTGCGTTCATCAAATCCTGGAGCCTTTTTCACAGTTTCTGAAAACTATGCTCACCAGCCATCTCCCAATTGTGATAGGCAAGCATTTCAAGTTGCCGATGGCGATTTCTTTGATTTTACAATGGGAAATGGAAGAGGGCCTCACAAAAGAAAAAGCCCTGGAATTCCTTCAGTATGTGAGAGAGGAAGCACAAGCAGATGTTTCAGTGCGGGAAGCTCAACTGATCTCCCTATAGCTTCAGAAGTAAGGCAGGAGAAGCCAAGCTTGGATTCTCAATATCTTCCTTGGGATCATGTCACTATGACACCCCCCTTCAGAGGCAGTGGCCTTTCAATCAGGGGTGAGGGTTCTTTAAGGAATGTTAGAAGTCGTTCTGCACTTGATTTGGAATCCAACCTTGCTAGGACGCATTTATCTAGCAACCATTTGCACAACTTATCTTCTGGCCCGTCCACTGACCATTCTAGCGCAGTGGGTCTTTCTGGTCATAGTTCTAGTAATATGACTAGGGACTGGAGCCAAATGAACATGTCTCCTGCTCATGGGAGGGTATTATTATCTGAATCAAGTGGATATAATCATGAACTGAGTCGCTTGCTAGTTGGAAGTGGTGTTAGTAATGCTTCGGTGGATGCTGGGAGTTACCATCATGAATATAACACAAGCATAAGTCCTACTGTTTCTCAAAGTTTTCTCAGTAACCTCACTCACCCTGCTAGGGAAGTTCGAAGTAACTATTCCCAAAGATCTACTCCAACACCAACTCCAACTTTTAGAGCCTCTTCAAGCTCGTGTGTGGGACATATGGTGCCTTCAGATGGTGGATTGCCCATGGGAGCTGAAGGTTTTATGTCTAGACATCCAAGACCATTGACTGCCATCAGTTGGCGGAATAGTGATAGAAATGGGGGGTCAAGGATATCTAGCGAGAGATATCGATCACTGGCTGATGAGGCTATTCTTCATGATCGATTCTCCTCTGAGGGTTTCATAGTTGTTGATCGTACACTGCTGTATGGTTCTCGGAATATGATTGATCAGCATAGAGAAATGAGGATGGACATAGATAACATGAGTTATGAGGAATTACTTGCTCTGGGAGAGAGGATTGGTCATGTCAGCACAGGCTTGTCTGAGAACATGATTTCCAAGTGTTTGACAGAATCAATATACTGTTCCTCTGAGCAGGGTCAAGAGGAAGGAAGTTGTGTAATCTGCCTGGAAGAGTACAAGTACACGGACGATGTTGGGACACTGAGAAGTTGCGGTCATGACTACCATGTGAGCTGCATTAGAAAGTGGTTATTGATGAAGAACATATGCCCTATCTGCAAAGCTTCTGCTCTTCCTGATGATATGAAGGATAAATAA 2256 0.434 MLVHAKMLAQHNLASSSSRCNSPVRGAHPPPPTHGFLFRIFIPDLLVFLLMYHIRLGLDGLLLCRFLDADGSYTTEKLINITSENWFSPGLFLVQVLEVGIFLHLVSSIALSELQMVLLEHLSWNFMHIMALDLIDALRRWNMDVVPQTGRRSTYFSGERQSVSRWLQVSGLTLDCWFYPVVEDTMSGKCLMISCFAVIVMGHRHLYSISQMFRSEHEQNWNYMHTDQHNVQLGRASTSENGSFIDPLENMSIDGSSLDASWNNAAMPNGYASSSINIELPPRQSDASRSSHDHFLRSSNPGAFFTVSENYAHQPSPNCDRQAFQVADGDFFDFTMGNGRGPHKRKSPGIPSVCERGSTSRCFSAGSSTDLPIASEVRQEKPSLDSQYLPWDHVTMTPPFRGSGLSIRGEGSLRNVRSRSALDLESNLARTHLSSNHLHNLSSGPSTDHSSAVGLSGHSSSNMTRDWSQMNMSPAHGRVLLSESSGYNHELSRLLVGSGVSNASVDAGSYHHEYNTSISPTVSQSFLSNLTHPAREVRSNYSQRSTPTPTPTFRASSSSCVGHMVPSDGGLPMGAEGFMSRHPRPLTAISWRNSDRNGGSRISSERYRSLADEAILHDRFSSEGFIVVDRTLLYGSRNMIDQHREMRMDIDNMSYEELLALGERIGHVSTGLSENMISKCLTESIYCSSEQGQEEGSCVICLEEYKYTDDVGTLRSCGHDYHVSCIRKWLLMKNICPICKASALPDDMKDK 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1220 751 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 663 744 - -
Lele05g1220 751 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 340 744 IPR045191 GO:0061630
Lele05g1220 751 SUPERFAMILY RING/U-box 688 745 - -
Lele05g1220 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 744 IPR013083 -
Lele05g1220 751 MobiDBLite consensus disorder prediction 536 560 - -
Lele05g1220 751 Pfam Ring finger domain 697 740 IPR001841 -
Lele05g1220 751 SMART ring_2 698 739 IPR001841 -
Lele05g1220 751 MobiDBLite consensus disorder prediction 436 469 - -
Lele05g1220 751 ProSiteProfiles Zinc finger RING-type profile. 698 740 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1220 Lele-ChrLele05 7655945 7664289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1220 201 750 C3H Transcription Factor Family AT2G37150 40.105 3.39e-101 320
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1220 05 7655945 7664289 Lele05g1220 05 7655945 7664289 ECH
Lele05g1220 05 7655945 7664289 Lele07g1268 07 7692797 7698665 hybridization
Lele05g1220 05 7655945 7664289 Lele08g1071 08 6791165 6793620 hybridization