Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1217 ATGCTTTCTGGTGACCCCTTTTCCCTATCTTCTTCCATCGGAGGCTTCCCTCCTGAACCCAACCCAAACCCTAACCCTAAACTCAATCCCCCTCCCCTCCCTAAGAAGAAGAGGAATCTCCCAGGAACACCAGATCCAGATGCGGAGGTCATCGCTCTCTCGCCTAAGTCCCTCATGGCGACCAACCGATTCATCTGTGAAATATGCAACAAAGGGTTCCAGAGGGACCAAAACCTGCAGCTTCATCGGAGGGGACACAACCTGCCATGGAAGCTGCGACAAAGGTCGAACAAGGAGGTCCGGAAGAAGGTGTACATATGCCCAGAGAAGACATGCGTACACCACGACCCTTCCAGAGCATTGGGGGACCTCACCGGGATAAAGAAGCATTATAGCAGAAAACACGGGGAGAAGAAATGGAAGTGCGACAAGTGTTCGAAGAAATACGCGGTCCAGTCCGATTGGAAAGCTCACACAAAAACTTGTGGTACTAGAGAATATAAGTGCGACTGTGGTACTCTCTTCTCTAGGAAGGATAGTTTCATCACCCACAGAGCTTTCTGTGATGCATTGACAGAAGAGGGTACGAGACTCACCTCAGTTGGTACGTCGGATTTAAATTTTAAAAACGATGAGAGTGTGATGAACTCTAACTCTCAGCTTAGCTCGGTACATGGATTTGGCATTTCGCAATTCAGTGCAAATGGGTTTCTTTCAGAATTTGATGGAATGGGCATGAGTATGGTGGGTGGTGCTGACCAGCAAATGAGGCCGAACTTGTCGCTGTGGCTGAACCAGCTGGGAAATAATCCTCGGATCAATAATCCTCTAGAAGTTGGACCTAATTCTGGTCTTTATGTGTCATCTTCAAGTTCTTCAGGTTTGCCTGAGATCAATATGCAAATGTGTCAATCTAATAATACCTTTTCTTCTTCTTCTTTGTCCAATTATTCCCCATCGTCACTTCCTAGTGGGAAAAAAGGAGAAAGTAGTGGAACTGGAAATTTAGTATCTATTTATAATCCAGACGTTCGAAACAACCAATCAAAGCCAGTTTCTCCCATGTCAGCCACTGCACTTCTACAGAAAGCGGCTCAGATAGGTTCGACCAGAAGCAGCAACCCTTCCATATTTAGCGGCAGTTTTGGAGTAATGAGCTCGTCTTCTTCCCAGACTACGGCAAGTCTCGAAAATAACGCGGACCAGAACCGTAACAACGAGCTGAACCAAGTGTATCAGAGTATGAAACAATCCGAGAATTTTAGTTCAAGTAGCAGTGGTGTCGGTGCGTTGGGGATGAGCAATAACTTCAGCTCTATGACGCATTCATCCAACATTGGTCTTGATGAGCTCGTGTCGCAATCCCATGGAAGACAAAGTAACAAACAAGTGCAATTGAAGCTGCATCCTGATCATTCAAAAACTGGGGAAAATGGTTACACCAGAGATTTTCTGGGAGTGAGCGGAGCAGGAGGAGCTGGCTCCCCTTTCCTTCCCCAAGCGCTCGCTAAATTTGCTTCCATTGCCTCATCCATGGGAATGTCTCAGTTCCCCAGTAGTACTAGTAACTTAAGTTAG 1578 0.4651 MLSGDPFSLSSSIGGFPPEPNPNPNPKLNPPPLPKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGTRLTSVGTSDLNFKNDESVMNSNSQLSSVHGFGISQFSANGFLSEFDGMGMSMVGGADQQMRPNLSLWLNQLGNNPRINNPLEVGPNSGLYVSSSSSSGLPEINMQMCQSNNTFSSSSLSNYSPSSLPSGKKGESSGTGNLVSIYNPDVRNNQSKPVSPMSATALLQKAAQIGSTRSSNPSIFSGSFGVMSSSSSQTTASLENNADQNRNNELNQVYQSMKQSENFSSSSSGVGALGMSNNFSSMTHSSNIGLDELVSQSHGRQSNKQVQLKLHPDHSKTGENGYTRDFLGVSGAGGAGSPFLPQALAKFASIASSMGMSQFPSSTSNLS 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1217 525 Gene3D Classic Zinc Finger 118 196 - -
Lele05g1217 525 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Lele05g1217 525 MobiDBLite consensus disorder prediction 17 39 - -
Lele05g1217 525 FunFam protein indeterminate-domain 12-like 43 111 - -
Lele05g1217 525 MobiDBLite consensus disorder prediction 454 478 - -
Lele05g1217 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 500 IPR031140 -
Lele05g1217 525 Gene3D Classic Zinc Finger 43 116 - -
Lele05g1217 525 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Lele05g1217 525 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Lele05g1217 525 MobiDBLite consensus disorder prediction 309 353 - -
Lele05g1217 525 MobiDBLite consensus disorder prediction 1 48 - -
Lele05g1217 525 MobiDBLite consensus disorder prediction 1 16 - -
Lele05g1217 525 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Lele05g1217 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Lele05g1217 525 SMART c2h2final6 64 86 IPR013087 -
Lele05g1217 525 SMART c2h2final6 140 160 IPR013087 -
Lele05g1217 525 SMART c2h2final6 105 135 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1217 Lele-ChrLele05 7638372 7640164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1217 1 246 IDZ Gene Family AT5G03150 66.300 8.95e-121 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele05g1217 zf-C2H2_jaz 7.7e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1217 05 7638372 7640164 Lele13g2051 13 27640019 27653630 CCT
Lele05g1217 05 7638372 7640164 Lele15g0355 15 2028189 2029552 CCT
Lele05g1217 05 7638372 7640164 Lele05g1217 05 7638372 7640164 ECH
Lele05g1217 05 7638372 7640164 Lele07g1264 07 7656825 7658609 hybridization
Lele05g1217 05 7638372 7640164 Lele08g1067 08 6767999 6769803 hybridization