Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1213 ATGGGTAACATAGGAAGTAGCAGCGCTAACGGCCGTCGGAGAAGTAATAGCAGACGGAGTCATCGGCCGCCGGCGGTTAGGCCGCAGCCAGAGATCACTTCGAATCGGCCTGTTCATCCAGCATCTACTCCTCAGACATCGCAACACCCAAACTCGAATCCTTCCCCGTATTTCCAGTACCCAGGTCACTATTCCGCTCCCCATCAGGCGATGCCTGCGCCTTTGCCGGCTCCTCTCGATCACCACCATCGCGCGAGGCCTCATCCACAAACGGACCCATCGTGGACGGGTGCAAGTTACCATTGCGGGCCTGCTATGCCTCCACCTCCACCATATGTAGAGCATCAGAAGGCGGTTACCATAAGGAACGATGTTAATGTTAAAAAGGAGACTCTAAGGATTGAACCCGATGAGCAAAATCCTGGGCGGTTCCTTGTTGCATTCACATTCGATGCCACCGTTGATGGGAGCATCACCATTCTTTTCTTTTGTAAAGAAGATGATAGCTGCAACCTCACACCAACGAAGCAAAATATTCTAGCCCCCGTAACTGTAAGTTTCCAGCAAGGTCTGGGCCAGCAGTTTAGGCAGCCAATTGGAACTGGTATTGAGTTGTCAATCTTTGAGGAGTCAGAATTATCAGAAGTGGGTGGAATAGGCGTGTTCCCTCTAGCAGTGAAGGCAGATGCATCCTGTGGTAAACAAGATGAATCAAATGAAAATTTAACATCTGGTAACAGAAACTCTCAGATAACTCTAGCAGCATTTGAGAAGGAGAAAGGGGAATTCCGGGTAAAGGTGGTTAAGCAGATCTTATGGGTGAATGAAATGAGGTATGTACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGACTTGGACGAGAATGATTCTGGAAAGGAGTGTGTCATCTGCCTCTCAGAGCCACGAGACACAACTGTTCTTCCCTGCCGACACATGTGCATGTGTAGTGGGTGTGCTAAGGTTCTGAGGTTTCAGACGAATAGATGCCCAATTTGCAGACAGCCAGTTGAGAGGCTTTTGGAGATAAAGTTTTCTTTCCCATACTTTTCCCGAATTTCAATTATGGAAATGCAGATTATGTATGATATGGTTGGTGGTGTTGGATATTTTGTCTGGTTTAAACTGAAGCTGGACATTTCAGGTCATGGAGTTGATGTCTTTGGGTAG 1197 0.4745 MGNIGSSSANGRRRSNSRRSHRPPAVRPQPEITSNRPVHPASTPQTSQHPNSNPSPYFQYPGHYSAPHQAMPAPLPAPLDHHHRARPHPQTDPSWTGASYHCGPAMPPPPPYVEHQKAVTIRNDVNVKKETLRIEPDEQNPGRFLVAFTFDATVDGSITILFFCKEDDSCNLTPTKQNILAPVTVSFQQGLGQQFRQPIGTGIELSIFEESELSEVGGIGVFPLAVKADASCGKQDESNENLTSGNRNSQITLAAFEKEKGEFRVKVVKQILWVNEMRYVLQEIYGIGNSVESDLDENDSGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKFSFPYFSRISIMEMQIMYDMVGGVGYFVWFKLKLDISGHGVDVFG 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1213 398 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 303 343 IPR045195 -
Lele05g1213 398 PIRSF SBP1_RNase_bind 14 94 IPR017066 -
Lele05g1213 398 PIRSF SBP1_RNase_bind 230 355 IPR017066 -
Lele05g1213 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 353 IPR013083 -
Lele05g1213 398 ProSiteProfiles Zinc finger RING-type profile. 304 343 IPR001841 -
Lele05g1213 398 Pfam Zinc finger, C3HC4 type (RING finger) 302 348 - -
Lele05g1213 398 MobiDBLite consensus disorder prediction 1 98 - -
Lele05g1213 398 SUPERFAMILY RING/U-box 303 349 - -
Lele05g1213 398 FunFam probable E3 ubiquitin-protein ligase LOG2 288 353 - -
Lele05g1213 398 MobiDBLite consensus disorder prediction 35 59 - -
Lele05g1213 398 SMART ring_2 304 342 IPR001841 -
Lele05g1213 398 PANTHER MAHOGUNIN 1 353 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1213 Lele-ChrLele05 7617177 7619920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1213 101 323 C3H Transcription Factor Family AT3G09770 61.135 2.17e-93 282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1213 05 7617177 7619920 Lele05g1213 05 7617177 7619920 ECH
Lele05g1213 05 7617177 7619920 Lele07g1258 07 7637187 7639345 hybridization
Lele05g1213 05 7617177 7619920 Lele08g1063 08 6748344 6751455 hybridization