LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele05g1211	ATGCAACGATATAGCTCAAGCTTCTATTCTCAGAGTTCAGACATGAAGATTCCCCGTTCATTTCTCTCCTGTTTCTCAGCAAAAGTCAAAGAACCAAGACAGCTCGATGAGCTAGAAGGAGGCAGTGGTAGTGAAGAACTTCGTGTATTCTCTCGTAGCGAATTGAAATTAGCCACTCGTGGTTTCAATTCCTGGGACAAGATTGGAGAAGGCGGATTCGGTTCTGTTTACAAGGGCCAGCTTCGGAACGGCAATATCGTGGCAGTGAAAGTGCTTTCAATCGAACTGGAATCCATGCGAGGAGAAATGGAGTTCGTAGCAGAATTGGCTACAATGTCTCGTATCAAGCACGAAAATCTAGTTAATCTTCGAGGGTGTTGTGTGGAAGAAGCCCGAAGATATTTAGTCTTCGACTACATGGAAAACAATAGCCTCTCCCGCAGTTTTTTAGTCACGGAGGAAAGAAGGATGAAATTCAGATGGGAATTGAGGAGGAACATATCTATGGGGGTGGCTCGTGGCCTTGCCTATTTGCATGAGCAACTAAAACCACACATTGTTCATAGGGATATCAAGCCCAGCAACATCCTTCTCGATCAAAACTTCACACCAAAACTAGCTGACTTTGGTTTCGCCAAGTTATTTAGGGACGACAAGTCCTACGTCAGCACTAGAGTCGCAGGGACATTGGGCTATCTTGCTCCCGAGTATGCCACCACTGGAAAGTTGACGCGAAAATCCGATGTTTATAGTTTTGGAGTATTAATCTTACAAATTGTTAGCGGCCAAGCAGTAGTTGATGCTTATCGGGATGACGATCGTTTCCTAGTAGAGAAGGTGTGGGCAGCTTATAGAGCTAACGAGCTAGTAAAAATGGTGGACCCTGTGATTACAAATATCAACTTGGTAGAGGAAGAAGCCATTCGATTCCTAAAAGTGGGGCTGCTTTGCGTGCAAGAAACCGCTAAGCTTCGGCCAAGAATGACAGAGGCCGTTGAAATGCTGAGTAGCAGCAGTAATAATAATGACATGGAAGGGGTTGTAATTTCAAAACCAGGGTTTGTTGCTGATCTAAGAAACATCAAAATAAGGCAGCAAATACCTGTACTAAGTCCCGAATCTATTTCAAGCGGAGCAAACCAGGGCATTTGGAGTTCCGTCATTGTCGCCCGTTAA	1176	0.4464	MQRYSSSFYSQSSDMKIPRSFLSCFSAKVKEPRQLDELEGGSGSEELRVFSRSELKLATRGFNSWDKIGEGGFGSVYKGQLRNGNIVAVKVLSIELESMRGEMEFVAELATMSRIKHENLVNLRGCCVEEARRYLVFDYMENNSLSRSFLVTEERRMKFRWELRRNISMGVARGLAYLHEQLKPHIVHRDIKPSNILLDQNFTPKLADFGFAKLFRDDKSYVSTRVAGTLGYLAPEYATTGKLTRKSDVYSFGVLILQIVSGQAVVDAYRDDDRFLVEKVWAAYRANELVKMVDPVITNINLVEEEAIRFLKVGLLCVQETAKLRPRMTEAVEMLSSSSNNNDMEGVVISKPGFVADLRNIKIRQQIPVLSPESISSGANQGIWSSVIVAR	391

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele05g1211	391	Gene3D	Phosphorylase Kinase; domain 1	35	139	-	-
	Lele05g1211	391	Gene3D	Transferase(Phosphotransferase) domain 1	140	350	-	-
	Lele05g1211	391	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	186	198	IPR008271	GO:0004672\|GO:0006468
	Lele05g1211	391	ProSitePatterns	Protein kinases ATP-binding region signature.	68	90	IPR017441	GO:0005524
	Lele05g1211	391	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	44	366	-	-
	Lele05g1211	391	Pfam	Protein kinase domain	65	333	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele05g1211	391	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	39	139	-	-
	Lele05g1211	391	ProSiteProfiles	Protein kinase domain profile.	62	354	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele05g1211	391	FunFam	Cysteine-rich receptor-like protein kinase 2	140	343	-	-
	Lele05g1211	391	SUPERFAMILY	Protein kinase-like (PK-like)	44	335	IPR011009	-
	Lele05g1211	391	CDD	STKc_IRAK	68	335	-	-
	Lele05g1211	391	SMART	serkin_6	62	335	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele05g1211	Lele-ChrLele05	7613119	7614824	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele05g1211	49	357	Receptor kinase-like Gene Family	AT1G56120	46.452	5.22e-87	280

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lele05g1211		Pkinase	5.9e-52	CL0016