Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1196 ATGATTCTCCACCACCAACCCCCCCTCCCTTGTGGCCTTCTGCCACTCCTTCCTTATGCCCACCTACCCACACCCACGCTCTCACCTTATCACCCCCTCTTATATAACTCAGCTCTCTTCCCCTTCCTCCTCTCAGGAAATCCCATCCTTCATCCCCAACATCCCATCTCTTCTTCAACCTCTACCTCCTCGATCCCTTCATTTGATCTATATTCTTCCTATTCCTTCTTCCACTCCTTCTATATCATTATTATCATAATGGAGTCCATAGCCAAGGCCAACGGTCACCATCAGAATGGCTCCTTCTGCTTGAGTAATGGCACCGCTGATCCCCTGAACTGGGGGGTCGCCGCGGAGTCCCTCAAGGGCAGCCACTTGGACGAGGTGAAGCGCATGGTGGAGGAGTACCGGAAGCCTGTGGTCAGCCTTGGCGGTGAGACCCTCACCATCTCTCAGGTGGCTGCCATTGCCGCACATAACCGGGGCGTTAAGGTGGAGCTGTCGGAGTCGTCCAGGGCCGGCGTTAAGGCCAGCAGCGACTGGGTCATGGACAGCATGAACAAGGGAACTGATAGCTACGGTGTAACCACCGGGTTCGGGGCCACCTCTCACCGGAGAACAAAGCAAGGCGCTGCTCTGCAGAAAGAGCTCATCAGATTCTTGAACGCCGGAATATTCGGCAATGGCACAGAGTCTTGCCAAACTCTGCCACACTCCGCCACAAGAGCCGCCATGCTTGTCAGAATCAACACTCTTCTCCAAGGATACTCTGGCATCCGATTTGAAATCCTAGAAGCCATCACCAAGCTCCTCAACCACAACATCACCCCATGCTTGCCACTCCGTGGTACCATCACAGCCTCCGGCGATCTCGTCCCTCTGTCTTACATCGCCGGTTTACTCACCGGAAGACCCAACTCCAAAGCCGTTGGACCCAACGGAGAAGCCCTTAATCCTAAGGAAGCTTTTCAATTGGCAGGCATCGAGTCCGAGTTCTTCGAATTGCAGCCCAAGGAAGGGCTTGCTCTTGTAAATGGTACCGCCGTTGGTTCTGGCTTGGCTTCCATGGTTCTCTTTGAGGCTAACATTCTCGCCGTGCTTGCTGAAGTTCTTTCTGCCATTTTCGCTGAAGTCATGCAAGGGAAGCCTGAATTTACAGACCATTTGACCCATAAATTGAAGCACCACCCCGGCCAGATTGAAGCCGCTGCGATCATGGAACACATTTTGGACGGAAGCTCCTATGTTAAAGCAGCCAAGAAGTTGCACGAGATGGATCCTCTGCAGAAACCTAAACAAGATCGCTATGCCCTTCGAACTTCACCACAATGGCTTGGACCTCTCATTGAAGTTATCAGATTCTCCACCAAATCAATTGAGAGAGAGATCAACTCTGTGAACGACAACCCCTTGATTGACGTTTCAAGGAACAAGGCTCTGCACGGTGGTAACTTCCAGGGTACCCCAATTGGTGTCTCCATGGACAACACTCGTCTGGCTATTGCTTCCATCGGAAAACTCATGTTTGCTCAGTTCTCTGAGCTCGTCAATGACTTCTACAACAATGGCTTACCTTCCAATCTCACTGCCAGTAGAAACCCTAGCTTGGATTATGGTCTCAAGGGAGCTGAAATCGCCATGGCTTCTTACTGCTCTGAACTTCAATACCTTGCCAATCCCGTGACAAGCCACGTCCAAAGTGCAGAGCAACACAACCAAGATGTGAACTCTCTGGGTTTGATCTCTTCTAGGAAAACAAACGAAGCCATTGAGATCTTAAAGCTCATGTCTTCCACATTTTTGGTTGCTCTCTGCCAAGCAATTGACTTGAGGCACTTGGAAGAGAACTTGAAGAACACAGTGAAGAACACCGTTAGCCAAGTTGCCAAGAGAACTCTGACCACAGGTGTGAATGGAGAACTCCACCCTTCAAGATTCTGCGAGAAGGATTTACTGAAAGTTGTAGACAGAGAGTACGTGTTTGCCTACGCCGATGATCCCTGCAGTGCTGTTTACCCATTGATGCAGAAACTCAGGCAAGTTCTCGTGGACCACGCACTGGCCAATGCCGAAAATGAGAAGAACACGAGCACATCAATCTTCCAAAAGATCGGAACTTTCGAGGAGGAATTGAAGAATGTGTTGCCGAAGGAAGTTGAGAGTGCAAGAGTTGCATGTGAGAGCGGCAATTGTGAGATTCCAAACAGGATCAAGGATTGCAGATCATACCCTCTGTACAAGTTTGTGAGAGAGGAGCTGGGAACTCAGTTGCTGACTGGCGAGAGGGTGATTTCACCGGGCGAGGAGTGTGACAAGGTGTTCACAGCGTTATGTCAGGGCAAGATCATTGACCCTCTTCTGGAATGTGTCGGCCAGTGGAATGGTGCCCCTCTTCCAATCTGTTAA 2406 0.505 MILHHQPPLPCGLLPLLPYAHLPTPTLSPYHPLLYNSALFPFLLSGNPILHPQHPISSSTSTSSIPSFDLYSSYSFFHSFYIIIIIMESIAKANGHHQNGSFCLSNGTADPLNWGVAAESLKGSHLDEVKRMVEEYRKPVVSLGGETLTISQVAAIAAHNRGVKVELSESSRAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGAALQKELIRFLNAGIFGNGTESCQTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEALNPKEAFQLAGIESEFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLAEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGLKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFAYADDPCSAVYPLMQKLRQVLVDHALANAENEKNTSTSIFQKIGTFEEELKNVLPKEVESARVACESGNCEIPNRIKDCRSYPLYKFVREELGTQLLTGERVISPGEECDKVFTALCQGKIIDPLLECVGQWNGAPLPIC 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1196 801 FunFam Phenylalanine ammonia-lyase 103 347 - -
Lele05g1196 801 CDD PAL-HAL 146 611 IPR001106 -
Lele05g1196 801 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 110 790 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lele05g1196 801 FunFam Phenylalanine ammonia-lyase 348 654 - -
Lele05g1196 801 PANTHER HISTIDINE AMMONIA-LYASE 100 801 IPR001106 -
Lele05g1196 801 Gene3D Fumarase/aspartase (Central domain) 348 796 - -
Lele05g1196 801 Gene3D - 103 347 IPR024083 -
Lele05g1196 801 Gene3D - 614 735 IPR023144 -
Lele05g1196 801 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 283 299 IPR022313 GO:0016841
Lele05g1196 801 Pfam Aromatic amino acid lyase 148 624 IPR001106 -
Lele05g1196 801 SUPERFAMILY L-aspartase-like 110 801 IPR008948 GO:0003824
Lele05g1196 801 FunFam Phenylalanine ammonia-lyase 614 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1196 Lele-ChrLele05 7502607 7506049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1196 110 801 Monolignol Biosynthesis Gene Families AT2G37040 85.405 0.0 1251
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1196 05 7502607 7506049 Lele06g1065 06 6613709 6617826 ECH
Lele05g1196 05 7502607 7506049 Lele05g1196 05 7502607 7506049 ECH
Lele05g1196 05 7502607 7506049 Lele07g1242 07 7521058 7525026 ECH
Lele05g1196 05 7502607 7506049 Lele08g1047 08 6643679 6647861 ECH
Lele06g1065 06 6613709 6617826 Lele05g1196 05 7502607 7506049 ECH
Lele07g1242 07 7521058 7525026 Lele05g1196 05 7502607 7506049 ECH
Lele08g1047 08 6643679 6647861 Lele05g1196 05 7502607 7506049 ECH
Lele05g1196 05 7502607 7506049 Lele07g1242 07 7521058 7525026 hybridization
Lele05g1196 05 7502607 7506049 Lele08g1047 08 6643679 6647861 hybridization