Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1178 ATGGGCAGAGCTCCTTGCTGCGACAAGGCCAATGTAAAGAAGGGACCATGGTCCCCTGAAGAAGACACTCAGCTAAAGGAGTACATAGAGAAACAGGGAACTGGAGGCAATTGGATTGCCCTCCCTCAAAAAGCTGGTCTCAAAAGATGTGGTAAAAGCTGTAGACTAAGATGGCTCAACTATCTCCGGCCTAACATCAAACACGGCGAGTTCTCCTATCATGAAGATAGGATCATCTGCAGCCTCTTTGCCAGCATCGGAAGCAGGTGGTCAGTGATAGCATCTCAGTTGCCTGGAAGGACTGATAACGATATTAAGAACTACTGGAACACCAAGCTTAAGAAGAAGATGATGACCATGAATTATAATCCTTCAGCTCATCATCACTACCAAGCCACCTTTTTACCGGTTCTCCAGAGTTCAACTCCATCTCCATCCTCATCATCAGCGTCGTCACCACTATCATTCACAGACAGCACCAACTCTTACTGCCACCCTCTTTATGCTTCTTCATTCTCAGCCGCTGATCAATCCATTTCCTTCTCGTCGTCGGCGAGTTTCTTGAACGGCGGCCATTCCTCTTGTGCTTCTGCAGCTGATGGCTCTTTCTATCAGCCCCAAGAAAGCTTGATTTGTAACTCTTCAAACGGGAGCTTTAATAATAGTGGCCAGATGAGTCATGTGAAAGAAGCTGAAGATGCTGGCTATGGAGTAGATCAAGAAACTATGGTGGAACAGATGATAGCTGCCAATAATAATAACTATGATTATCTGCAGAATATTGGGAATGAGATGGAAAAAACTGAGAAGGTGATGGTGTGGGATGAGGACTACGTGAATGGTTGGACGGGGAAACAAAATGGACTGTGGGAAGAGAATCCGCCATTAGATTATGCGATAGAAGAAATTAAGCAGCTAGTAAGTTCTAGTAGTTGCAGCAACTTTTTGTTTGATGAAAACATGACACAGAAAAGGGCCTTGTACCACTACTGA 993 0.4481 MGRAPCCDKANVKKGPWSPEEDTQLKEYIEKQGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSYHEDRIICSLFASIGSRWSVIASQLPGRTDNDIKNYWNTKLKKKMMTMNYNPSAHHHYQATFLPVLQSSTPSPSSSSASSPLSFTDSTNSYCHPLYASSFSAADQSISFSSSASFLNGGHSSCASAADGSFYQPQESLICNSSNGSFNNSGQMSHVKEAEDAGYGVDQETMVEQMIAANNNNYDYLQNIGNEMEKTEKVMVWDEDYVNGWTGKQNGLWEENPPLDYAIEEIKQLVSSSSCSNFLFDENMTQKRALYHY 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1178 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Lele05g1178 330 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele05g1178 330 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lele05g1178 330 CDD SANT 16 62 IPR001005 -
Lele05g1178 330 FunFam Transcription factor RAX3 7 68 - -
Lele05g1178 330 Gene3D - 69 133 - -
Lele05g1178 330 CDD SANT 75 113 IPR001005 -
Lele05g1178 330 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lele05g1178 330 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lele05g1178 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Lele05g1178 330 PANTHER OS09G0431300 PROTEIN 1 271 - -
Lele05g1178 330 Gene3D - 7 68 - -
Lele05g1178 330 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lele05g1178 330 SMART sant 67 115 IPR001005 -
Lele05g1178 330 SMART sant 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1178 Lele-ChrLele05 7386390 7387700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1178 1 166 MYB Transcription Factor Family AT2G36890 67.470 1.36e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele05g1178 Myb_DNA-binding 2.1e-14 CL0123