Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1176 ATGCCTGATCCTTATGATTCCATGTACGAGGACGCCGAAGTTTTGGCGGCACAAATATTAGAAAGCGAAGAGGAATCTGCAGCCAGCGAAGACGAGGATGAGGAGGACGTGGACGGGGACGAAGATGAGGCCGAAGAGTACATTCCGCTTATACAGTCTCCTAGGGCTTGGCGGGGCGTTCCTTCTACCTCCAATCAACGTGATACCATAGTTTACGAGGTTCCGGATGATTCTGTTGAAGAAGAGGTAAACAAACGGCGGAGGACTGAAGGAGGAGAAACGTGTACGTCTTTGGGAAATGGGAGCGCCGACAGCAGTCAAGGGAATGAGTGGAACCGTGCTGACATTGATGGCTTGTATTGCCCCATTTGTATGGATGCCTGGACCAATGACGGTGAACACCACATCTGCTGTCTTCCGTGTGGGCACATATATGGCATGTCTTGCATCAAAAGGTGGCTTCAACAGCGAAGAAATTCTGGGAAGTGTCCACAATGCAACAGGAAATGTGCATTGAGGGATGTGAGGAAACTCTATGCTTCACGTGTACTTGCTGCTGATGAAGAGTCACAGAAGAAAATTCGGTCGCTTGAGGCCAGATGTGTTATTCTCGAAGGCAGGGGCTCTGACTGGTGCAAGAAAGAAGCAGCATGGAAGAAAAAAGAAGCTCAATGGGATCTCGAAGTTAAGAAACTTACGGAGAGAAATAAATATTTGGAGCAGCTAATACAAGATATGGAAAGGAGGCAAACTGGTACCATGGAGGCAATTGGGAATTGTCGATGGGGATCTGAATCAAAACATGGCTTCGGGGCAAAGATATATGGGAAAGGACATTGTTGCAATTTTGAATTGAAGAAAGAGTTTCAGCTGGGCAGTCCTCTTGTATTTGACGTAAATGCTTCTAATCAAATTTTATTAATAGCACAAAGGCCAAGAGGGATAGGTGGACCTTACTTGCTAGCTAAAATGAGTTTGATACCTCCATATGAGATGGAAGATATCTTGCTGCCTTCTGCTTCATGTGCCATTAAAGATCTCCATATTTCCCCTTTGAATAGTGACCTGGCCCTTTATGCCTCATTAGGAAGGAAATTATCAGTACTCAGCATGGAGAGCAACAATGTGGTTGTCAATTATGATCTGCAGGATCCTGCTTGGTCATGTTCATGGGATCTCAGCAATTCCCATTATGTATATGCTGGACTACAGAATGGTTCTGTCTTGGTATTTGATTTGCGCCAAACTGCTGGGCCCATGAAATCCCTGAATGGGTTAACTAGCAACCCCGTTCATACTGTACAGTCACTTGTACAAGATTCCAGTCTTCCTTCAGGTGTTGGAACAATTCTATCCGCTTCTGCCATTGGCCTGTGTCAGTGGAACATAGGTGCTGAAGAGGGGCCGTGGATGATTCCTGAAACTGGTAATCAAGGGGTTTGTATATCTCTTGCCTATTGCCCAAGTAGTAACGATGTTGTCACATCATACCGTCCCAAATTTGACATGTCCATGGATGGATCTCTCTATCAACCATCTCTCACTCCTTCCCAAGTTATAGGACAAGGAGTCCAGGGCTCTCATGTCTTGATCAAGAGACTTGGGGGAAGCCACTTTCAACAGTTGGGTTCCTCATGTGCCAATGTAAGTAACATTCGACTTCCAAAATGTGTAATAATGGATATAGAGAGTGAGGGCCAATTGTTAGTATCCGTAGATGAATGTGCATGCGAATTGGTCTTGCAAGAGTTGCCATCTTTTGGGGTTGTTCAGCGTCTGAAATTACCAGAGCATGCTCGGGATCTGAAGTATTCACCTACTCTGAGTCATGGATTACTGGGTTGTTTAACCGGAAAGTCATTGCAACTTTTCTGTACCAAACTCTTGTGA 1890 0.4524 MPDPYDSMYEDAEVLAAQILESEEESAASEDEDEEDVDGDEDEAEEYIPLIQSPRAWRGVPSTSNQRDTIVYEVPDDSVEEEVNKRRRTEGGETCTSLGNGSADSSQGNEWNRADIDGLYCPICMDAWTNDGEHHICCLPCGHIYGMSCIKRWLQQRRNSGKCPQCNRKCALRDVRKLYASRVLAADEESQKKIRSLEARCVILEGRGSDWCKKEAAWKKKEAQWDLEVKKLTERNKYLEQLIQDMERRQTGTMEAIGNCRWGSESKHGFGAKIYGKGHCCNFELKKEFQLGSPLVFDVNASNQILLIAQRPRGIGGPYLLAKMSLIPPYEMEDILLPSASCAIKDLHISPLNSDLALYASLGRKLSVLSMESNNVVVNYDLQDPAWSCSWDLSNSHYVYAGLQNGSVLVFDLRQTAGPMKSLNGLTSNPVHTVQSLVQDSSLPSGVGTILSASAIGLCQWNIGAEEGPWMIPETGNQGVCISLAYCPSSNDVVTSYRPKFDMSMDGSLYQPSLTPSQVIGQGVQGSHVLIKRLGGSHFQQLGSSCANVSNIRLPKCVIMDIESEGQLLVSVDECACELVLQELPSFGVVQRLKLPEHARDLKYSPTLSHGLLGCLTGKSLQLFCTKLL 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1176 629 MobiDBLite consensus disorder prediction 19 64 - -
Lele05g1176 629 CDD mRING-C3HGC3_RFWD3 117 167 - -
Lele05g1176 629 Pfam Ring finger domain 120 167 IPR001841 -
Lele05g1176 629 MobiDBLite consensus disorder prediction 24 47 - -
Lele05g1176 629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 239 IPR013083 -
Lele05g1176 629 PANTHER RFWD3 PROTEIN 21 627 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Lele05g1176 629 MobiDBLite consensus disorder prediction 78 109 - -
Lele05g1176 629 Gene3D - 334 510 IPR015943 GO:0005515
Lele05g1176 629 SUPERFAMILY WD40 repeat-like 337 511 IPR036322 GO:0005515
Lele05g1176 629 SUPERFAMILY RING/U-box 113 171 - -
Lele05g1176 629 MobiDBLite consensus disorder prediction 78 92 - -
Lele05g1176 629 Coils Coil 229 249 - -
Lele05g1176 629 SMART ring_2 121 166 IPR001841 -
Lele05g1176 629 MobiDBLite consensus disorder prediction 93 109 - -
Lele05g1176 629 ProSiteProfiles Zinc finger RING-type profile. 121 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1176 Lele-ChrLele05 7369179 7373245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1176 120 172 C3H Transcription Factor Family AT1G51930 40.741 5.16e-07 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1176 05 7369179 7373245 Lele05g1176 05 7369179 7373245 ECH
Lele05g1176 05 7369179 7373245 Lele07g1220 07 7387573 7391662 hybridization