Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1168 ATGATAGTAAGTTATGGCCTCTTTTGGTATTTCACTACATCCCCTCTGATATTTTCCCAGCAGCGTGCATTTTCCTCCCCTCCCTCCCATCTCTCCTCTCTGGAGAGAAACCTCCTTTCGCGCTTCCCAATTCTGCCTCCAGTGCAGTCTCTACCACCATTCTCATCACTGTCTGAATTATCCTTTTCTTTCCTGTTTAGGCTCTGTATTCAACGGGAAGCAAGAGCAGAATCTGGAACGATGGAGTCCATCGTGGAGCCTCAGATTTCAGCCCAGGAAATTTCTCAAACAGATGACGGCTCTCGTTCTAAGATGGGATATGGCAGCTACGGGTGCTCACACTATAGAAGGAGATGCAAGATAATAGCACCTTGTTGCAACGAAATATTCGACTGCAGACATTGCCATAATGAATCTAAGAATTCGATTGAACTGGACCCTGTTGATCGCCATGACATTCCTCGTCACAATTTAAAGAGGGTTATCTGTTCCTTGTGTAGAACTGAGCAAGACGTTCAACAGATGTGCATTCAGTGCGGTGTTTGCATGGGGAAGTACTTCTGCTCCAAGTGCAAGTTTTTTGATGATGATGTATCAAAGAATCAGTACCATTGCAATGAATGTGGTATCTGCAGAATTGGAGGCGAGGAGAATTTTTTCCACTGCAACAAATGTGGATGTTGCTATTCAACATTGTTGAAGGACTCACACCGTTGCGTTGAAAAAGCTATGCATCACAATTGTCCTGTTTGCTTCGAGTTTCTTTTTGATACCACAAAAGACATTACTGTAATGCCATGTGGTCACTCTATCCATCTGGAATGCGTGAGAGAAATGGAGCAACATTTCCAGTATTCTTGTCCTGTTTGCTCAAAATCTTTTTGTGATATGTCGCGTGTGTGGGAGAGGCTGGATCATGAGGTTGCATCCACACCTATGCCAGAAATATATCAAAATAAGATCGTCTGGATTCTGTGCAATGATTGTGGGGAAACATCAGAGGTGAGCTTTCACGTTTTGGCGCACAAGTGTATAAGATGCAAATCATACAACACCAGACTGACGCGAGGCGGACCTGCTTCATCATGCTCATCCAACATTGAAGAGCTGCTGCAATGA 1119 0.4406 MIVSYGLFWYFTTSPLIFSQQRAFSSPPSHLSSLERNLLSRFPILPPVQSLPPFSSLSELSFSFLFRLCIQREARAESGTMESIVEPQISAQEISQTDDGSRSKMGYGSYGCSHYRRRCKIIAPCCNEIFDCRHCHNESKNSIELDPVDRHDIPRHNLKRVICSLCRTEQDVQQMCIQCGVCMGKYFCSKCKFFDDDVSKNQYHCNECGICRIGGEENFFHCNKCGCCYSTLLKDSHRCVEKAMHHNCPVCFEFLFDTTKDITVMPCGHSIHLECVREMEQHFQYSCPVCSKSFCDMSRVWERLDHEVASTPMPEIYQNKIVWILCNDCGETSEVSFHVLAHKCIRCKSYNTRLTRGGPASSCSSNIEELLQ 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1168 372 Pfam Ring finger domain 247 290 IPR001841 -
Lele05g1168 372 ProSiteProfiles Zinc finger RING-type profile. 248 291 IPR001841 -
Lele05g1168 372 SMART ring_2 248 290 IPR001841 -
Lele05g1168 372 SUPERFAMILY CHY zinc finger-like 108 183 IPR037274 GO:0008270
Lele05g1168 372 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 86 356 - -
Lele05g1168 372 SUPERFAMILY Zinc hairpin stack 184 241 IPR037275 -
Lele05g1168 372 ProSiteProfiles Zinc finger CHY-type profile. 105 181 IPR008913 GO:0008270
Lele05g1168 372 ProSiteProfiles Zinc finger CTCHY-type profile. 183 247 IPR017921 -
Lele05g1168 372 SUPERFAMILY RING/U-box 247 297 - -
Lele05g1168 372 Pfam CHY zinc finger 112 193 IPR008913 GO:0008270
Lele05g1168 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 293 IPR013083 -
Lele05g1168 372 Pfam Zinc-ribbon 295 353 IPR039512 -
Lele05g1168 372 Gene3D - 319 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1168 Lele-ChrLele05 7320490 7323367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1168 110 356 C2H2 Transcription Factor Family AT3G18290 40.316 6.21e-54 190