Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1166 ATGGATAGTGGGATTGAGGGAGGGGGATTGTGGATCACCGAGGATGCGGTGAAAGCGAAGGCGATTGACCTCACTTAAATTGGAAATGGAGGTTCATGGAATCTGAACATGTGGCTCATGGGGCAGAATTTTGTTCATGATGCCCTCGCAACTCGCCGACAAAACTTCCAACCCCGGTCCTCAATCCCCATCCCCTACGTGCCTCTTATCCTTCCTGCATACGTGTCACCCTCTGGATGCCTTCCGCCGAGTCGCTTCGCTTGGAAACAAGCACTTGCTATTCCTATAGCGTCTGATATCCCAAAACACCCACACAATATGCCGATCCGAAACATCGCCGTCGGTAGGCCTGAGGAGGCAACTCAGGCCGATACCTTAAAGGCCGGGTTGGCCGAGTTCATCTCCACCCTCATCTTCGTTTTTGCCGGTGAAGGCTCTGGCATGGCCTTCAACAAGCTCACCAACGACGGTGCCACCACCCCCGCCGGCCTCATCTCCGCCTCCATCGCTCACGCCTTCGCTCTGTTCGTCGCGGTCTCCGTTGGGTTTAACATCTCCGGCGGCCACGTCAACCCCGCTGTCACCTTCGGAGCCTTCATCGGAGGCAACATCACCTTGTTGCGAGGCATCGTCTACTGGATCGCTCAGCTTCTCGGTTCCACCGTTGCTTGCTTGCTCCTCAAGTTCGTCACCGGAGGACTGACCACAACAGCTTTTGCACTGTCGTCCGGAGTTGGAGTATGGAACGCGGTGGTGTTCGAGATAGTGATGACGTTCGGGTTGGTGTACACAGTGTACGCGACGGCCGTTGATCCTAAGAAGGGCAATTTGGGAGTAATAGCGCCCATCGCGATCGGTTTCATCGTGGGAGCCAACATTCTTGCGGGTGGGGCCTTCGATGGTGCGTCCATGAACCCGGCAGTTTCATTCGGGCCAGCGTTGGTGAGCTGGAGCTGGGACAACCACTGGGTCTACTGGGTCGGGCCACTTATTGGTGGCGGGCTGGCAGGGCTCATCTACGAGGTCGTCTTCATTTCCCACACCCACGAGCAGCTCCCCACCACAGACTATTAA 1074 0.5642 MDSGIEGGGLWITEDAVKAKAIDLTXIGNGGSWNLNMWLMGQNFVHDALATRRQNFQPRSSIPIPYVPLILPAYVSPSGCLPPSRFAWKQALAIPIASDIPKHPHNMPIRNIAVGRPEEATQADTLKAGLAEFISTLIFVFAGEGSGMAFNKLTNDGATTPAGLISASIAHAFALFVAVSVGFNISGGHVNPAVTFGAFIGGNITLLRGIVYWIAQLLGSTVACLLLKFVTGGLTTTAFALSSGVGVWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGLIYEVVFISHTHEQLPTTDY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1166 357 PANTHER AQUAPORIN-8 112 352 IPR034294 -
Lele05g1166 357 PRINTS Major intrinsic protein family signature 171 195 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele05g1166 357 PRINTS Major intrinsic protein family signature 286 308 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele05g1166 357 PRINTS Major intrinsic protein family signature 323 343 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele05g1166 357 PRINTS Major intrinsic protein family signature 127 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele05g1166 357 PRINTS Major intrinsic protein family signature 253 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele05g1166 357 PRINTS Major intrinsic protein family signature 208 227 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele05g1166 357 Pfam Major intrinsic protein 120 340 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele05g1166 357 ProSitePatterns MIP family signature. 189 197 IPR022357 -
Lele05g1166 357 FunFam Probable aquaporin TIP1-1 110 357 - -
Lele05g1166 357 CDD MIP 127 343 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele05g1166 357 Gene3D Glycerol uptake facilitator protein. 110 357 IPR023271 -
Lele05g1166 357 SUPERFAMILY Aquaporin-like 120 353 IPR023271 -
Lele05g1166 357 TIGRFAM MIP: MIP family channel proteins 131 340 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1166 Lele-ChrLele05 7307779 7312381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1166 107 357 Major Intrinsic Protein MIP AT2G36830 82.869 1.89e-148 417