Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1165 ATGGAGGTCACAGGCCAGGAACTTGTGGTGTGGGATAAGGATCATCAAGCCCAGGTCATGAAGGGCAAGCGCACCAAGCGTTCCAGGCTACCCTCTCCACTCAGGCTATCCATGGCTTCTTCTTCTTCTAGCGCCGGCAGAAACAGCACCGACGACAATTCCGGCGGGTCGTCATCAGTAGTAGATATGGCTACGACCTCGACTGATCATCAATTGAGGGTGACCAGCGAAGAAGAGGACATGGCTAACTGTTTGATCCTTCTGGCTCAAGGCCATGCCAATGACGAGCCCTCTTCCCACAACAACAACGATAAGGCTTCCTCTGGGCTGTACGTTTATCAGTGCAAGACCTGTGATCGATGCTTCCCTTCGTTCCAAGCGCTCGGTGGACACAGGGCCAGCCACAAGAAACCAAAGCCAAACAATAATTCTGAAGAAAAGCTGCAATCAGTTGCATTTAAGAACCAAGGGGCTCATGAACCCTATGACCCCACCGACACAAGCTTCGTCCTCTCGATGCAGATATCGAATAGTGCTTCGTATAGCAGCAATAGTAACAGGAATAAGTCGAAAGTTCACGGGTGTTCTATATGTGGGGCTGATTTCACATCTGGGCAAGCTTTGGGGGGTCATATGAGGCGCCACAGAACATTGGCGAACAACTCTGCAACGTGTACGACGAGGAGCACGGGGAATAATAATTCTGAACTCCAGCAAGCCAACAAGCCCAATAATGTTTTCAAGTTGGATTTGAATCTTCCCGCACCGGAAGACGATAACAGAGAATCCAAGTTGCCGTTTCAGACTCAAGACAATGTTCTTGTTTTCTCTGCGTCTTCTTTGGTGGATTGCCAAATCAACAATGAAGTTTACTTGCTAGGTCTCGGCGGCCCCGAGGATCCCTCGGTGGGCTGGGAACTCGTAGGCAGCAAAGGCAGAATGGCGGTTCCAGGGAGGCGCAATGGTCTAGACGACGACGACGACGACAATTTCGAAGATGGCAACGCCCTTTTTGAAGAAAATGGTCCGTTGGAACTTGATGATTCGGATACGCCTCCTTATCTCCGCGACCTAGCCGTCGCCTCTCAGTTTGGTGACCTCGATAACCTGCGCCTTGCTCTAGATAACTTGACTGGAAGCATTGATGAACCTGTGGAAGATGGGGATACGGCTCTACATCTGACCTGCTTATATGGCCATTTATCGTGTGTTCAGCTACTTCTGGAAAGAGGAGCGAACATGGAGTCTAAGGATGAAGACGGTGCAATTCCATTACATGATGCTTGTGCAGGAGGGTATGCTGAGATAGTCCAACTGCTACTTAACAGAGCTGATAATGCAGAGCATATAAGGAGGATGCTTGAATCAGTTGATTCAGAGGGTGATACACCGCTCCACCATGCTGCTAGAGGCGAGCATGTTGATGTCATTAGGTTGTTGCTGTCTCATGGCGCATCTCCCACAAAGACAAACTTATATGGAAAGACCCCAGCAGAATTACCTGATCATGGCACAGACGCAAGGAGATTGCTGGAAGCCGCTGGTGCTACTTCCATGCCATCTCACTAG 1569 0.4978 MEVTGQELVVWDKDHQAQVMKGKRTKRSRLPSPLRLSMASSSSSAGRNSTDDNSGGSSSVVDMATTSTDHQLRVTSEEEDMANCLILLAQGHANDEPSSHNNNDKASSGLYVYQCKTCDRCFPSFQALGGHRASHKKPKPNNNSEEKLQSVAFKNQGAHEPYDPTDTSFVLSMQISNSASYSSNSNRNKSKVHGCSICGADFTSGQALGGHMRRHRTLANNSATCTTRSTGNNNSELQQANKPNNVFKLDLNLPAPEDDNRESKLPFQTQDNVLVFSASSLVDCQINNEVYLLGLGGPEDPSVGWELVGSKGRMAVPGRRNGLDDDDDDNFEDGNALFEENGPLELDDSDTPPYLRDLAVASQFGDLDNLRLALDNLTGSIDEPVEDGDTALHLTCLYGHLSCVQLLLERGANMESKDEDGAIPLHDACAGGYAEIVQLLLNRADNAEHIRRMLESVDSEGDTPLHHAARGEHVDVIRLLLSHGASPTKTNLYGKTPAELPDHGTDARRLLEAAGATSMPSH 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1165 522 Pfam Ankyrin repeat 461 491 IPR002110 GO:0005515
Lele05g1165 522 ProSiteProfiles Ankyrin repeat region circular profile. 420 443 - -
Lele05g1165 522 SUPERFAMILY Ankyrin repeat 358 499 IPR036770 -
Lele05g1165 522 ProSitePatterns Zinc finger C2H2 type domain signature. 195 215 IPR013087 -
Lele05g1165 522 MobiDBLite consensus disorder prediction 19 67 - -
Lele05g1165 522 ProSiteProfiles Ankyrin repeat profile. 420 452 IPR002110 GO:0005515
Lele05g1165 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Lele05g1165 522 Pfam C2H2-type zinc finger 192 216 - -
Lele05g1165 522 Pfam C2H2-type zinc finger 112 138 - -
Lele05g1165 522 ProSiteProfiles Ankyrin repeat profile. 460 492 IPR002110 GO:0005515
Lele05g1165 522 ProSiteProfiles Ankyrin repeat region circular profile. 460 486 - -
Lele05g1165 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 215 IPR013087 -
Lele05g1165 522 ProSiteProfiles Ankyrin repeat profile. 387 419 IPR002110 GO:0005515
Lele05g1165 522 ProSiteProfiles Ankyrin repeat region circular profile. 387 419 - -
Lele05g1165 522 SMART ANK_2a 460 489 IPR002110 GO:0005515
Lele05g1165 522 SMART ANK_2a 420 449 IPR002110 GO:0005515
Lele05g1165 522 SMART ANK_2a 387 416 IPR002110 GO:0005515
Lele05g1165 522 Pfam Ankyrin repeats (3 copies) 358 445 IPR002110 GO:0005515
Lele05g1165 522 SUPERFAMILY beta-beta-alpha zinc fingers 112 215 IPR036236 -
Lele05g1165 522 SMART c2h2final6 193 215 IPR013087 -
Lele05g1165 522 SMART c2h2final6 113 135 IPR013087 -
Lele05g1165 522 FunFam BRCA1-associated RING domain protein 1 352 519 - -
Lele05g1165 522 PANTHER ZINC FINGER PROTEIN ZAT5 66 263 - -
Lele05g1165 522 Gene3D Classic Zinc Finger 110 215 - -
Lele05g1165 522 MobiDBLite consensus disorder prediction 34 67 - -
Lele05g1165 522 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Lele05g1165 522 Gene3D - 352 517 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1165 Lele-ChrLele05 7296144 7301171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1165 19 284 C2H2 Transcription Factor Family AT5G03510 41.379 6.31e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele05g1165 Ank_2 4.5e-12 CL0465